See: Description
| Interface | Description |
|---|---|
| PredictWindowBase.BackgroundTask |
| Class | Description |
|---|---|
| AboutWindow | |
| AccessFoldWindow |
A class responsible for initializing and running the AccessFold module, which
folds two strands of nucleic acids into their likely hybrid structure.
|
| ChildWindow |
The base class for all RNAstructure GUI dialogs and windows.
|
| ChildWindow.CommandInfo | |
| DesignWindow |
A class responsible for initializing and running the Design module, which
attempts to find a sequence that is expected to fold into the
structure given in a CT file.
|
| DrawingWindow |
A class responsible for displaying a drawing window.
|
| DuplexFoldWindow |
A class responsible for initializing and running the DuplexFold module, which
folds two strands of nucleic acids into their likely hybrid structure.
|
| DynalignFoldWindow |
A class responsible for initializing and running the Dynalign module, which
calculates common structures for two strands of nucleic acids.
|
| DynalignRefoldWindow |
A class responsible for initializing and running the Dynalign refold
module, which refolds a previous Dynalign calculation from a save file.
|
| Efn2Window |
A class responsible for initializing and running the efn2 (Energy Function
2) module, which calculates the folding free energy of structures.
|
| FoldDoubleWindow |
A class responsible for initializing and running the bifold module, which
folds two strands of nucleic acids into their likely hybrid structure.
|
| FoldSingleWindow |
A class responsible for initializing and running the Fold module, which
folds a strand of nucleic acids into their likely lowest free energy
structure.
|
| FoldSuboptimalWindow |
A class responsible for initializing and running the AllSub module, which
calculates the free energy of a varied group of suboptimal structures.
|
| InternalWindow |
The base class for all RNAstructure GUI dialogs and windows.
|
| InternalWindow.CommandInfo |
An immutable object that represents a command invoked by some part of the program, e.g.
|
| MaxExpectWindow |
A class responsible for initializing and running the MaxExpect module,
which generates a group of structures containing pairs with the maximum
probability of being accurate.
|
| ModuleWindow |
A class responsible for creating and displaying a window that enables a
user to input data for one of the RNAstructure modules.
|
| MultilignWindow |
A class responsible for initializing and running the Multilign module,
which calculates common secondary structures of multiple sequences using
multiple iterations of Dynalign.
|
| MultiWindow |
A class responsible for creating and displaying an input window that takes
multiple arbitrary sequences and CT files as input.
|
| OligoScreenWindow |
A class responsible for initializing and running the OligoScreen module,
which calculates thermodynamic properties for a list of oligonucleotides.
|
| OligoWalkWindow |
A class that handles creation of windows for the OligoWalk module.
|
| PartitionDoubleWindow |
A class responsible for initializing and running the bipartition module,
which calculates the partition function for two strands of nucleic acids.
|
| PartitionSingleWindow |
A class responsible for initializing and running the partition module, which
calculates the partition function for a single strand of nucleic acids.
|
| PredictBimolStructureWindow | |
| PredictionResultsWindow |
Used by the Predict*StructureWindow classes to show prediction results to the user.
|
| PredictionResultsWindow.PlotResult | |
| PredictMultiStructureWindow | |
| PredictSingleStructureWindow | |
| PredictTwoStructureWindow | |
| PredictWindowBase |
A base class for the Structure Prediction Windows
|
| PredictWindowBase.PredictTaskBase | |
| ProbKnotWindow |
A class responsible for initializing and running the ProbKnot module, which
predicts pseudoknots in a strand of nucleic acids.
|
| PseudoknotWindow |
A class responsible for initializing and running the RemovePseudoknots
module, which removes pseudoknots from a nucleic acid sequence.
|
| RefoldWindow |
A class responsible for initializing and running the refold module, which
refolds a previous folding calculation from a save file.
|
| SequenceDisplayWindow |
A class responsible for displaying a window that allows a user to examine
raw sequence data.
|
| StochasticWindow |
A class responsible for initializing and running the stochastic module,
which generates a stochastic sample of structures.
|
| TurboFoldWindow |
A class responsible for initializing and running the TurboFold module,
which calculates common secondary structures of multiple sequences using
the partition function and probabalistic alignments.
|