public abstract class MultiWindow extends ModuleWindow
InternalWindow.CommandInfojavax.swing.JInternalFrame.AccessibleJInternalFrame, javax.swing.JInternalFrame.JDesktopIconjavax.swing.JComponent.AccessibleJComponent| Modifier and Type | Field and Description |
|---|---|
protected int |
columnWidth
The width of each column of the window (input controls in column 1,
sequence set in column 2).
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protected java.util.ArrayList<DrawingWindow> |
imageDialogs
The list of drawing windows shown after the calculation is done.
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protected javax.swing.Box |
options
The box that holds a particular window's unique options.
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private ScrollerPane |
scroll
The scroll pane holding the sequence set.
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private static long |
serialVersionUID |
isRNA, lastUpdate, log, mainCalcThread, progressIndicator, protectedExamplesDir, self, startButtonbackend, changeListener, frameListener, warningsclosable, CONTENT_PANE_PROPERTY, desktopIcon, FRAME_ICON_PROPERTY, frameIcon, GLASS_PANE_PROPERTY, iconable, IS_CLOSED_PROPERTY, IS_ICON_PROPERTY, IS_MAXIMUM_PROPERTY, IS_SELECTED_PROPERTY, isClosed, isIcon, isMaximum, isSelected, LAYERED_PANE_PROPERTY, maximizable, MENU_BAR_PROPERTY, resizable, ROOT_PANE_PROPERTY, rootPane, rootPaneCheckingEnabled, title, TITLE_PROPERTYlistenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOWaccessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT| Modifier | Constructor and Description |
|---|---|
protected |
MultiWindow(java.lang.String acid,
java.lang.String type)
Constructor.
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| Modifier and Type | Method and Description |
|---|---|
protected abstract void |
activate()
Activate data input for this window.
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protected abstract void |
addBackendTuple(java.lang.String seq,
java.lang.String ct)
Add a tuple to the calculation back end.
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protected abstract void |
buildSpecificOptionsPanel()
Build an input options box specific to this window.
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protected MergeMenu[] |
createCustomMenus()
Override to create one or more custom menus that should be
added to the main frame whenever this internal frame is active.
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protected abstract void |
deleteBackendTuple(int index)
Delete a tuple from the calculation back end.
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protected abstract int |
getNumSequences()
Get the number of sequences this window handles.
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protected abstract java.lang.String |
getSequenceSetAsString()
Get a representation of the sequence set as a string.
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protected void |
makeInputControls()
Make any input controls necessary to get data from this window for a
calculation.
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protected void |
processCommand(InternalWindow.CommandInfo ci)
Perform an action specific to this window.
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protected boolean |
runMainCalculation()
Run the module calculation in the back end.
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protected abstract boolean |
runMainCalculationMultipleSequences()
Run the multiple sequence dependent module calculation in the back end.
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protected void |
showImageDialogs()
Show the image dialogs, if possible.
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calcWasCanceled, cancelMainCalculation, close, closeProgress, closeProgress, combineFileNames, displayCalcError, drawStructures, getInputControl, getInputControl, getOutputFile, getOutputFile, makeStartButton, placeComponent, promptDraw, promptDraw, runOnUiThread, setAnchorCenter, setAnchorNorth, setFillCenter, setFillHorizontal, setGrid, setInsets, setPad, showDrawProgress, showDrawProgress, showProgress, showProgress, showProgress, showProgress, updateCalcProgress, verifyBackendResultactionPerformed, frameActivated, frameClosed, frameClosing, getCustomMenus, invokeCommand, invokeCommand, invokeCommand, isActiveFrame, notifyUpdated, onFocusGained, propertyChanged, setCaption, setCustomMenus, showWindowaddImpl, addInternalFrameListener, createRootPane, dispose, doDefaultCloseAction, fireInternalFrameEvent, getAccessibleContext, getContentPane, getDefaultCloseOperation, getDesktopIcon, getDesktopPane, getFocusCycleRootAncestor, getFocusOwner, getFrameIcon, getGlassPane, getInternalFrameListeners, getJMenuBar, getLastCursor, getLayer, getLayeredPane, getMenuBar, getMostRecentFocusOwner, getNormalBounds, getRootPane, getTitle, getUI, getUIClassID, getWarningString, hide, isClosable, isClosed, isFocusCycleRoot, isIcon, isIconifiable, isMaximizable, isMaximum, isResizable, isRootPaneCheckingEnabled, isSelected, moveToBack, moveToFront, pack, paintComponent, paramString, remove, removeInternalFrameListener, reshape, restoreSubcomponentFocus, setClosable, setClosed, setContentPane, setCursor, setDefaultCloseOperation, setDesktopIcon, setFocusCycleRoot, setFrameIcon, setGlassPane, setIcon, setIconifiable, setJMenuBar, setLayer, setLayer, setLayeredPane, setLayout, setMaximizable, setMaximum, setMenuBar, setNormalBounds, setResizable, setRootPane, setRootPaneCheckingEnabled, setSelected, setTitle, setUI, show, toBack, toFront, updateUIaddAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, updateadd, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, transferFocusDownCycle, validate, validateTreeaction, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycleprotected final int columnWidth
protected java.util.ArrayList<DrawingWindow> imageDialogs
protected javax.swing.Box options
private ScrollerPane scroll
private static final long serialVersionUID
protected MultiWindow(java.lang.String acid,
java.lang.String type)
acid - The nucleic acid type.type - The type of window.protected abstract void activate()
protected abstract void addBackendTuple(java.lang.String seq,
java.lang.String ct)
seq - The sequence file.ct - The ct file.protected abstract void buildSpecificOptionsPanel()
protected MergeMenu[] createCustomMenus()
InternalWindowcreateCustomMenus in class InternalWindowprotected abstract void deleteBackendTuple(int index)
index - The index of the tuple to delete.protected abstract int getNumSequences()
protected abstract java.lang.String getSequenceSetAsString()
protected void makeInputControls()
ModuleWindowmakeInputControls in class ModuleWindowprotected void processCommand(InternalWindow.CommandInfo ci)
ModuleWindowprocessCommand in class ModuleWindowci - Information about the command.protected boolean runMainCalculation()
ModuleWindowrunMainCalculation in class ModuleWindowprotected abstract boolean runMainCalculationMultipleSequences()
protected void showImageDialogs()