ur_rna.RNAstructureUI.windows

Class PredictTwoStructureWindow.PredictTask

java.lang.Object

ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

ur_rna.RNAstructureUI.windows.PredictTwoStructureWindow.PredictTask

All Implemented Interfaces:

java.lang.Runnable, PredictWindowBase.BackgroundTask

Enclosing class:

PredictTwoStructureWindow

private class PredictTwoStructureWindow.PredictTask
extends PredictWindowBase.PredictTaskBase

Field Summary

Fields

Modifier and Type	Field and Description
boolean	allowBaseInserts
int	alnWindowSize
java.lang.String	baseOutputName1
java.lang.String	baseOutputName2
java.lang.String	baseOutputNameShared
java.lang.String	conFile1
java.lang.String	conFile2
double	gapPenalty
int	maxEnergyDiff
int	maxStructures
java.lang.String	outDsv
java.lang.String	outDynAln
java.lang.String	outDynCt1
java.lang.String	outDynCt2
java.lang.String	outPartsCt1
java.lang.String	outPartsCt2
int	partsMode
int	seqType1
int	seqType2
java.lang.String	sequence1
java.lang.String	sequence2
java.lang.String	shapeFile
int	stochasticSamples
int	windowSize

Fields inherited from class ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

canCancel, errorMessage, hadError, isCanceled, nextStepWork, status, stepProgress, workDone

Constructor Summary

Constructors

Modifier	Constructor and Description
private	PredictTask()

Method Summary

Modifier and Type	Method and Description
protected void	runCalc()
protected boolean	showResults() Show the results window.

Methods inherited from class ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

cancel, checkError, checkError, checkError, checkError, checkError, getProgress, getStatus, isCancelable, nextStep, onComplete, run, setError

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

allowBaseInserts

public boolean allowBaseInserts

alnWindowSize

public int alnWindowSize

baseOutputName1

public java.lang.String baseOutputName1

baseOutputName2

public java.lang.String baseOutputName2

baseOutputNameShared

public java.lang.String baseOutputNameShared

conFile1

public java.lang.String conFile1

conFile2

public java.lang.String conFile2

gapPenalty

public double gapPenalty

maxEnergyDiff

public int maxEnergyDiff

maxStructures

public int maxStructures

outDsv

public java.lang.String outDsv

outDynAln

public java.lang.String outDynAln

outDynCt1

public java.lang.String outDynCt1

outDynCt2

public java.lang.String outDynCt2

outPartsCt1

public java.lang.String outPartsCt1

outPartsCt2

public java.lang.String outPartsCt2

partsMode

public int partsMode

seqType1

public int seqType1

seqType2

public int seqType2

sequence1

public java.lang.String sequence1

sequence2

public java.lang.String sequence2

shapeFile

public java.lang.String shapeFile

stochasticSamples

public int stochasticSamples

windowSize

public int windowSize

Constructor Detail

PredictTask

private PredictTask()

Method Detail

runCalc

protected void runCalc()

Specified by:

runCalc in class PredictWindowBase.PredictTaskBase

showResults

protected boolean showResults()

Show the results window.

Specified by:

showResults in class PredictWindowBase.PredictTaskBase

Returns:

True if the results window could be shown. False otherwise.