ur_rna.RNAstructureUI.windows

Class PredictSingleStructureWindow.PredictSingleStructureTask

java.lang.Object

ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

ur_rna.RNAstructureUI.windows.PredictSingleStructureWindow.PredictSingleStructureTask

All Implemented Interfaces:

java.lang.Runnable, PredictWindowBase.BackgroundTask

Enclosing class:

PredictSingleStructureWindow

private class PredictSingleStructureWindow.PredictSingleStructureTask
extends PredictWindowBase.PredictTaskBase

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.String	alphabet
java.lang.String	baseOutputName
java.lang.String	conFile
double	gamma
int	iterations
int	maxEnergyDiff
int	maxLoopSize
int	maxStructures
int	minHelixLen
java.lang.String	outFoldCt
java.lang.String	outMaxExpectCt
java.lang.String	outPfs
java.lang.String	outPkCt
java.lang.String	outSav
int	seqType
java.lang.String	sequence
java.lang.String	sequenceTitle
java.lang.String	shapeFile
double	shapeIntercept
double	shapeSlope
double	temperature
int	windowSize

Fields inherited from class ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

canCancel, errorMessage, hadError, isCanceled, nextStepWork, status, stepProgress, workDone

Constructor Summary

Constructors

Modifier	Constructor and Description
private	PredictSingleStructureTask()

Method Summary

Modifier and Type	Method and Description
protected void	runCalc()
protected boolean	showResults() Show the results window.

Methods inherited from class ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

cancel, checkError, checkError, checkError, checkError, checkError, getProgress, getStatus, isCancelable, nextStep, onComplete, run, setError

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

alphabet

public java.lang.String alphabet

baseOutputName

public java.lang.String baseOutputName

conFile

public java.lang.String conFile

gamma

public double gamma

iterations

public int iterations

maxEnergyDiff

public int maxEnergyDiff

maxLoopSize

public int maxLoopSize

maxStructures

public int maxStructures

minHelixLen

public int minHelixLen

outFoldCt

public java.lang.String outFoldCt

outMaxExpectCt

public java.lang.String outMaxExpectCt

outPfs

public java.lang.String outPfs

outPkCt

public java.lang.String outPkCt

outSav

public java.lang.String outSav

seqType

public int seqType

sequence

public java.lang.String sequence

sequenceTitle

public java.lang.String sequenceTitle

shapeFile

public java.lang.String shapeFile

shapeIntercept

public double shapeIntercept

shapeSlope

public double shapeSlope

temperature

public double temperature

windowSize

public int windowSize

Constructor Detail

PredictSingleStructureTask

private PredictSingleStructureTask()

Method Detail

runCalc

protected void runCalc()

Specified by:

runCalc in class PredictWindowBase.PredictTaskBase

showResults

protected boolean showResults()

Show the results window.

Specified by:

showResults in class PredictWindowBase.PredictTaskBase

Returns:

True if the results window could be shown. False otherwise.