ur_rna.RNAstructureUI.windows

Class PredictMultiStructureWindow.PredictTask

java.lang.Object

ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

ur_rna.RNAstructureUI.windows.PredictMultiStructureWindow.PredictTask

All Implemented Interfaces:

java.lang.Runnable, PredictWindowBase.BackgroundTask

Enclosing class:

PredictMultiStructureWindow

private class PredictMultiStructureWindow.PredictTask
extends PredictWindowBase.PredictTaskBase

Field Summary

Fields

Modifier and Type	Field and Description
(package private) boolean	allowBaseInserts
(package private) RNAstructureBackendCalculator	bc
(package private) java.lang.String	multiAln
(package private) int	multiAlnSize
(package private) java.lang.String[]	multiCTs
(package private) int	multiDsvChange
(package private) double	multiGapPenalty
(package private) int	multiIterations
(package private) int	multiMaxEnergyDiff
(package private) int	multiMaxPairs
(package private) int	multiMaxStructures
(package private) java.lang.String[]	multiPFSs
(package private) int	multiWindowSize
(package private) double	temperature
(package private) java.lang.String	turboAln
(package private) java.lang.String[]	turboCTs
(package private) double	turboGamma
(package private) int	turboIterations
(package private) int	turboMaxEnergyDiff
(package private) int	turboMaxStructures
(package private) double	turboMEAGamma
(package private) int	turboMinHelix
(package private) int	turboMode
(package private) java.lang.String[]	turboPFSs
(package private) int	turboPKIterations
(package private) double	turboThreshold
(package private) int	turboWindowSize

Fields inherited from class ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

canCancel, errorMessage, hadError, isCanceled, nextStepWork, status, stepProgress, workDone

Constructor Summary

Constructors

Modifier	Constructor and Description
private	PredictTask()

Method Summary

Modifier and Type	Method and Description
int	getProgress()
protected void	runCalc()
protected boolean	showResults() Show the results window.

Methods inherited from class ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

cancel, checkError, checkError, checkError, checkError, checkError, getStatus, isCancelable, nextStep, onComplete, run, setError

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

allowBaseInserts

boolean allowBaseInserts

bc

RNAstructureBackendCalculator bc

multiAln

java.lang.String multiAln

multiAlnSize

int multiAlnSize

multiCTs

java.lang.String[] multiCTs

multiDsvChange

int multiDsvChange

multiGapPenalty

double multiGapPenalty

multiIterations

int multiIterations

multiMaxEnergyDiff

int multiMaxEnergyDiff

multiMaxPairs

int multiMaxPairs

multiMaxStructures

int multiMaxStructures

multiPFSs

java.lang.String[] multiPFSs

multiWindowSize

int multiWindowSize

temperature

double temperature

turboAln

java.lang.String turboAln

turboCTs

java.lang.String[] turboCTs

turboGamma

double turboGamma

turboIterations

int turboIterations

turboMaxEnergyDiff

int turboMaxEnergyDiff

turboMaxStructures

int turboMaxStructures

turboMEAGamma

double turboMEAGamma

turboMinHelix

int turboMinHelix

turboMode

int turboMode

turboPFSs

java.lang.String[] turboPFSs

turboPKIterations

int turboPKIterations

turboThreshold

double turboThreshold

turboWindowSize

int turboWindowSize

Constructor Detail

PredictTask

private PredictTask()

Method Detail

getProgress

public int getProgress()

Specified by:

getProgress in interface PredictWindowBase.BackgroundTask

Overrides:

getProgress in class PredictWindowBase.PredictTaskBase

runCalc

protected void runCalc()

Specified by:

runCalc in class PredictWindowBase.PredictTaskBase

showResults

protected boolean showResults()

Show the results window.

Specified by:

showResults in class PredictWindowBase.PredictTaskBase

Returns:

True if the results window could be shown. False otherwise.