ur_rna.RNAstructureUI.windows

Class PredictBimolStructureWindow.PredictTask

java.lang.Object

ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

ur_rna.RNAstructureUI.windows.PredictBimolStructureWindow.PredictTask

All Implemented Interfaces:

java.lang.Runnable, PredictWindowBase.BackgroundTask

Enclosing class:

PredictBimolStructureWindow

private class PredictBimolStructureWindow.PredictTask
extends PredictWindowBase.PredictTaskBase

Field Summary

Fields

Modifier and Type	Field and Description
(package private) java.lang.String	conFile1
(package private) java.lang.String	conFile2
(package private) boolean	isRNA
(package private) int	maxEnergyDiff
(package private) int	maxLoopSize
(package private) int	maxStructures
(package private) java.lang.String	outBase1
(package private) java.lang.String	outBase2
(package private) java.lang.String	outBiCt
(package private) java.lang.String	outDupCt
(package private) java.lang.String	outShared
(package private) int	seqType1
(package private) int	seqType2
(package private) java.lang.String	sequence1
(package private) java.lang.String	sequence2
(package private) double	temperature
(package private) int	windowSize

Fields inherited from class ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

canCancel, errorMessage, hadError, isCanceled, nextStepWork, status, stepProgress, workDone

Constructor Summary

Constructors

Modifier	Constructor and Description
private	PredictTask()

Method Summary

Modifier and Type	Method and Description
protected void	runCalc()
protected boolean	showResults() Show the results window.

Methods inherited from class ur_rna.RNAstructureUI.windows.PredictWindowBase.PredictTaskBase

cancel, checkError, checkError, checkError, checkError, checkError, getProgress, getStatus, isCancelable, nextStep, onComplete, run, setError

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

conFile1

java.lang.String conFile1

conFile2

java.lang.String conFile2

isRNA

boolean isRNA

maxEnergyDiff

int maxEnergyDiff

maxLoopSize

int maxLoopSize

maxStructures

int maxStructures

outBase1

java.lang.String outBase1

outBase2

java.lang.String outBase2

outBiCt

java.lang.String outBiCt

outDupCt

java.lang.String outDupCt

outShared

java.lang.String outShared

seqType1

int seqType1

seqType2

int seqType2

sequence1

java.lang.String sequence1

sequence2

java.lang.String sequence2

temperature

double temperature

windowSize

int windowSize

Constructor Detail

PredictTask

private PredictTask()

Method Detail

runCalc

protected void runCalc()

Specified by:

runCalc in class PredictWindowBase.PredictTaskBase

showResults

protected boolean showResults()

Show the results window.

Specified by:

showResults in class PredictWindowBase.PredictTaskBase

Returns:

True if the results window could be shown. False otherwise.