Constant Field Values

ur_rna.GUITester.*

ur_rna.GUITester.ScriptRunner
Modifier and Type Constant Field Value

private static final boolean TRACE_PARSE_TREE false
ur_rna.GUITester.ur_rna.GUITester.ScriptRuntime
Modifier and Type Constant Field Value

private final boolean DEBUG_GUI_MATCHER false
ur_rna.GUITester.ScriptRuntimeException
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L

ur_rna.GUITester.ScriptRunner
Modifier and Type	Constant Field	Value
`private static final boolean`	`TRACE_PARSE_TREE`	`false`

ur_rna.GUITester.ur_rna.GUITester.ScriptRuntime
Modifier and Type	Constant Field	Value
`private final boolean`	`DEBUG_GUI_MATCHER`	`false`

ur_rna.GUITester.ScriptRuntimeException
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`1L`

ur_rna.GUITester.GuiTools.GuiItemNotFoundException
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L

ur_rna.GUITester.GuiTools.GuiItemNotFoundException
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`1L`

ur_rna.GUITester.GuiTools.GuiRobot
Modifier and Type	Constant Field	Value
`public static final int`	`DEFAULT_POLL_TIME`	`50`
`public static final int`	`DEFAULT_TEST_WAIT_TIME`	`250`
`public static final int`	`DEFAULT_WAIT_TIME`	`2000`

ur_rna.GUITester.GuiTools.Matchers.DescriptionMatcher
Modifier and Type	Constant Field	Value
`public static final int`	`SEARCH_ACCESSIBLE`	`7340032`
`public static final int`	`SEARCH_ACCESSIBLE_DESC`	`4194304`
`public static final int`	`SEARCH_ACCESSIBLE_NAME`	`1048576`
`public static final int`	`SEARCH_ACCESSIBLE_TEXT`	`2097152`
`public static final int`	`SEARCH_ALL`	`-1`
`public static final int`	`SEARCH_CAPTION`	`4194308`
`public static final int`	`SEARCH_COMMENT`	`4195328`
`public static final int`	`SEARCH_INPUT`	`2097154`
`public static final int`	`SEARCH_NAME`	`5242881`
`public static final int`	`SEARCH_NONE`	`0`
`public static final int`	`SEARCH_SELECTION`	`16384`
`public static final int`	`SEARCH_TEXT`	`6291462`
`public static final int`	`SEARCH_TOOLTIP`	`1024`
`public static final int`	`SEARCH_TRUE_CAPTION`	`4`
`public static final int`	`SEARCH_TRUE_INPUT`	`2`
`public static final int`	`SEARCH_TRUE_NAME`	`1`
`public static final int`	`SEARCH_TRUE_TEXT`	`6`

ur_rna.GUITester.ScriptParser.GuiTestScriptParserConstants
Modifier and Type	Constant Field	Value
`public static final int`	`ANCESTOR`	`68`
`public static final int`	`ANDASSIGN`	`77`
`public static final int`	`ARROW`	`41`
`public static final int`	`ASSIGN`	`42`
`public static final int`	`ASSIGN_REF`	`43`
`public static final int`	`BIT_AND`	`63`
`public static final int`	`BIT_NOT`	`47`
`public static final int`	`BIT_OR`	`64`
`public static final int`	`CHILD`	`69`
`public static final int`	`COLON`	`49`
`public static final int`	`COMMA`	`39`
`public static final int`	`DECIMAL_LITERAL`	`11`
`public static final int`	`DECR`	`57`
`public static final int`	`DEFAULT`	`0`
`public static final int`	`DESCENDANT`	`72`
`public static final int`	`DIGIT`	`13`
`public static final int`	`DIRECTIVE_PREFIX`	`26`
`public static final int`	`DOT`	`40`
`public static final int`	`EOF`	`0`
`public static final int`	`EQ`	`50`
`public static final int`	`ESC_CHAR`	`21`
`public static final int`	`ESCAPED_CHAR`	`23`
`public static final int`	`EXPONENT`	`18`
`public static final int`	`FALSE`	`8`
`public static final int`	`FLOAT_LITERAL`	`17`
`public static final int`	`FLOAT_SUFFIX`	`19`
`public static final int`	`GE`	`52`
`public static final int`	`GT`	`44`
`public static final int`	`HEX_CHAR`	`24`
`public static final int`	`HEX_DIGIT`	`14`
`public static final int`	`HEX_LITERAL`	`12`
`public static final int`	`HOOK`	`48`
`public static final int`	`IDENTIFIER`	`28`
`public static final int`	`INCR`	`56`
`public static final int`	`INT_SUFFIX`	`16`
`public static final int`	`INTEGER_LITERAL`	`10`
`public static final int`	`LBRACE`	`34`
`public static final int`	`LBRACKET`	`36`
`public static final int`	`LE`	`51`
`public static final int`	`LETTER`	`31`
`public static final int`	`LPAREN`	`32`
`public static final int`	`LSHIFTASSIGN`	`81`
`public static final int`	`LT`	`45`
`public static final int`	`METHOD_PREFIX`	`27`
`public static final int`	`MINUS`	`59`
`public static final int`	`MINUSASSIGN`	`74`
`public static final int`	`MOD`	`66`
`public static final int`	`MULTI_LINE_COMMENT`	`6`
`public static final int`	`NE`	`53`
`public static final int`	`NEWLINE`	`3`
`public static final int`	`NOT`	`46`
`public static final int`	`NULL`	`9`
`public static final int`	`OCTAL_LITERAL`	`15`
`public static final int`	`ORASSIGN`	`78`
`public static final int`	`PARENT`	`67`
`public static final int`	`PLUS`	`58`
`public static final int`	`PLUSASSIGN`	`73`
`public static final int`	`POW`	`60`
`public static final int`	`RBRACE`	`35`
`public static final int`	`RBRACKET`	`37`
`public static final int`	`REL_LABEL`	`71`
`public static final int`	`REMASSIGN`	`80`
`public static final int`	`RPAREN`	`33`
`public static final int`	`RSIGNEDSHIFTASSIGN`	`82`
`public static final int`	`RUNSIGNEDSHIFTASSIGN`	`83`
`public static final int`	`SC_AND`	`55`
`public static final int`	`SC_OR`	`54`
`public static final int`	`SEMICOLON`	`38`
`public static final int`	`SIBLING`	`70`
`public static final int`	`SINGLE_LINE_COMMENT`	`5`
`public static final int`	`SLASH`	`62`
`public static final int`	`SLASHASSIGN`	`76`
`public static final int`	`STAR`	`61`
`public static final int`	`STARASSIGN`	`75`
`public static final int`	`STRING_CHAR`	`22`
`public static final int`	`STRING_LITERAL`	`20`
`public static final int`	`TRUE`	`7`
`public static final int`	`UNICODE_CHAR`	`25`
`public static final int`	`WORD_CHAR`	`30`
`public static final int`	`WORD_START_CHAR`	`29`
`public static final int`	`XOR`	`65`
`public static final int`	`XORASSIGN`	`79`

ur_rna.GUITester.ScriptParser.GuiTestScriptParserTreeConstants
Modifier and Type	Constant Field	Value
`public static final int`	`JJTACTION`	`3`
`public static final int`	`JJTASSIGNMENT`	`2`
`public static final int`	`JJTGUIREFERENCE`	`4`
`public static final int`	`JJTGUISEARCHCRITERIA`	`5`
`public static final int`	`JJTLITERAL`	`7`
`public static final int`	`JJTNAMEDARGUMENT`	`8`
`public static final int`	`JJTROOT`	`0`
`public static final int`	`JJTVARREF`	`6`
`public static final int`	`JJTVOID`	`1`

ur_rna.GUITester.ScriptParser.JavaCharStream
Modifier and Type Constant Field Value

public static final boolean staticFlag false
ur_rna.GUITester.ScriptParser.ParseException
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L
ur_rna.GUITester.ScriptParser.ParseFormatException
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L

ur_rna.GUITester.ScriptParser.JavaCharStream
Modifier and Type	Constant Field	Value
`public static final boolean`	`staticFlag`	`false`

ur_rna.GUITester.ScriptParser.ParseException
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`1L`

ur_rna.GUITester.ScriptParser.ParseFormatException
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`1L`

ur_rna.GUITester.ScriptParser.ScriptNodePropConstants
Modifier and Type	Constant Field	Value
`public static final int`	`LHS`	`2`
`public static final int`	`OPERATION`	`0`
`public static final int`	`PRIMITIVE`	`3`
`public static final int`	`RHS`	`1`

ur_rna.GUITester.ScriptParser.Token
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L

ur_rna.GUITester.ScriptParser.Token
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`1L`

ur_rna.GUITester.ScriptParser.TokenMgrError
Modifier and Type	Constant Field	Value
`static final int`	`INVALID_LEXICAL_STATE`	`2`
`static final int`	`LEXICAL_ERROR`	`0`
`static final int`	`LOOP_DETECTED`	`3`
`private static final long`	`serialVersionUID`	`1L`
`static final int`	`STATIC_LEXER_ERROR`	`1`

ur_rna.RNAstructure.*

ur_rna.RNAstructure.Nucleobase
Modifier and Type	Constant Field	Value
`public static final int`	`A`	`1`
`public static final int`	`Break`	`5`
`public static final int`	`C`	`2`
`public static final int`	`G`	`3`
`public static final int`	`T`	`4`
`public static final int`	`Unknown`	`0`

ur_rna.RNAstructure.RnaBackendException
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L

ur_rna.RNAstructure.RnaBackendException
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`1L`

ur_rna.RNAstructure.RNAstructureVersion
Modifier and Type	Constant Field	Value
`public static final java.lang.String`	`RELEASE_DATE`	`"February 12, 2018"`
`public static final java.lang.String`	`VERSION`	`"6.0.1"`

ur_rna.RNAstructureUI.*

ur_rna.RNAstructureUI.AppMainFrame
Modifier and Type	Constant Field	Value
`public static final int`	`EditMenuSection`	`-80`
`public static final int`	`FileMenuSection`	`-100`
`public static final int`	`HelpMenuSection`	`1000`
`public static final int`	`NucleicAcidMenuSection`	`-40`
`public static final int`	`PredictMenuSection`	`-60`
`private static final long`	`serialVersionUID`	`20160128L`

ur_rna.RNAstructureUI.RNAstructure
Modifier and Type	Constant Field	Value
`public static final java.lang.String`	`RELEASE_DATE`	`"February 12, 2018"`
`public static final java.lang.String`	`REQUIRED_DLL_VERSION`	`"6.0.1"`
`private static final long`	`serialVersionUID`	`20120802L`
`public static final java.lang.String`	`VERSION`	`"6.0.1"`

ur_rna.RNAstructureUI.drawing.dialogs.ImageDialog
Modifier and Type	Constant Field	Value
`protected final int`	`preferredDialogWidth`	`450`
`private static final long`	`serialVersionUID`	`20120802L`

ur_rna.RNAstructureUI.drawing.dialogs.ImageDialog.PrintMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.drawing.dialogs.ur_rna.RNAstructureUI.drawing.dialogs.ImageDialog.ZoomDialog
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20120802L`

ur_rna.RNAstructureUI.drawing.dialogs.PlotDialog
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.drawing.dialogs.StructureDialog
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.drawing.menus.AnnotationMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.drawing.menus.DotsMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120615L
ur_rna.RNAstructureUI.drawing.menus.ur_rna.RNAstructureUI.drawing.menus.DotsMenu.ColorDialog
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.drawing.menus.ur_rna.RNAstructureUI.drawing.menus.DotsMenu.RangeDialog
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.drawing.menus.PlotMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120615L
ur_rna.RNAstructureUI.drawing.menus.StructureMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.drawing.menus.DotsMenu
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20120615L`

ur_rna.RNAstructureUI.drawing.menus.PlotMenu
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20120615L`

ur_rna.RNAstructureUI.drawing.menus.ur_rna.RNAstructureUI.drawing.menus.StructureMenu.ChooseStructureDialog
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20120802L`

ur_rna.RNAstructureUI.drawing.runners.PlotRunner
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.drawing.runners.StructureRunner
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.menus.ConstraintsMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.menus.ConstraintsMenu.NucOrHelixDialog
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.menus.FileMenu
Modifier and Type	Constant Field	Value
`public static final int`	`DrawSection`	`-80`
`public static final int`	`RefoldSection`	`-60`
`public static final int`	`SequenceSection`	`-100`
`private static final long`	`serialVersionUID`	`20120802L`

ur_rna.RNAstructureUI.menus.HelpMenu
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`HELP_URL`	`"http://rna.urmc.rochester.edu/GUI/html/Contents.html"`
`private static final java.lang.String`	`LOCAL_HELP_PAGE`	`"Contents.html"`
`private static final long`	`serialVersionUID`	`20120802L`
`private static final java.lang.String`	`WEB_URL`	`"http://rna.urmc.rochester.edu/"`

ur_rna.RNAstructureUI.menus.MainMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20160315L
ur_rna.RNAstructureUI.menus.MenuRolloverAdapter
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.menus.NucleicAcidMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.menus.PredictMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20160121L
ur_rna.RNAstructureUI.menus.RolloverListener
Modifier and Type Constant Field Value

private static final long serialVersionUID 20160316L

ur_rna.RNAstructureUI.menus.MainMenu
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20160315L`

ur_rna.RNAstructureUI.menus.PredictMenu
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20160121L`

ur_rna.RNAstructureUI.menus.RolloverListener
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20160316L`

ur_rna.RNAstructureUI.ui.BorderBuilder
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.BorderedButtonPanel
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.Dialogs
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.FieldPanel
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.FieldPanel.FilePanel
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.FileField
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.HTMLCheckBox
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.NumberField
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.NumberField.DoubleField
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.NumberField.FloatField
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.NumberField.IntegerField
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.ui.RadioButtonPanel
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.ui.ScrollerPane
Modifier and Type	Constant Field	Value
`public static final int`	`ALWAYS`	`1`
`public static final int`	`NEVER`	`2`
`private static final long`	`serialVersionUID`	`20120802L`

ur_rna.RNAstructureUI.ui.StandardFileChooser
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`DEFAULT_CONTEXT`	`"(default)"`
`public static final java.lang.String`	`PREFS`	`"recent-file-locations"`

ur_rna.RNAstructureUI.ui.ValueSelectionDialog
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.utilities.BackgroundWorker
Modifier and Type Constant Field Value

public static final int DEFAULT_UPDATE_INTERVAL 250
ur_rna.RNAstructureUI.utilities.ImageGrabber
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.utilities.UserOptions
Modifier and Type	Constant Field	Value
`public static final java.lang.String`	`DRAW_ALWAYS`	`"Y"`
`public static final java.lang.String`	`DRAW_NEVER`	`"N"`
`public static final java.lang.String`	`DRAW_PROMPT`	`"P"`

ur_rna.RNAstructureUI.windows.AccessFoldWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20160714L
ur_rna.RNAstructureUI.windows.ChildWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.DesignWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20160524L
ur_rna.RNAstructureUI.windows.DrawingWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.DuplexFoldWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20160714L
ur_rna.RNAstructureUI.windows.DynalignFoldWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.DynalignRefoldWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.Efn2Window
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.FoldDoubleWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.FoldSingleWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.FoldSuboptimalWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.InternalWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.MaxExpectWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.ModuleWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.MultilignWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.MultiWindow
Modifier and Type Constant Field Value

protected final int columnWidth 350

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.OligoScreenWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.OligoWalkWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.ur_rna.RNAstructureUI.windows.OligoWalkWindow.BarButton
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.OligoWalkWindow.OligoSelectionDialog
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.windows.ur_rna.RNAstructureUI.windows.OligoWalkWindow.OligoWalkResultsMenu
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20120802L`

ur_rna.RNAstructureUI.windows.OligoWalkWindow.SpinnerPanel
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.OligoWalkWindow.StringComboBox
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.PartitionDoubleWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.PartitionSingleWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.windows.PredictBimolStructureWindow
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20160122L`
`private final java.lang.String`	`settingsNodeName`	`"PredictBimol"`

ur_rna.RNAstructureUI.windows.PredictMultiStructureWindow
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20160122L`
`private final java.lang.String`	`settingsNodeName`	`"PredictMulti"`

ur_rna.RNAstructureUI.windows.PredictSingleStructureWindow
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20160122L`
`private final java.lang.String`	`settingsNodeName`	`"PredictSingle"`

ur_rna.RNAstructureUI.windows.PredictTwoStructureWindow
Modifier and Type	Constant Field	Value
`private static final long`	`serialVersionUID`	`20160122L`
`private final java.lang.String`	`settingsNodeName`	`"PredictDynalign"`

ur_rna.RNAstructureUI.windows.PredictWindowBase
Modifier and Type Constant Field Value

public static final double TEMP_37C 310.15
ur_rna.RNAstructureUI.windows.ProbKnotWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.PseudoknotWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.RefoldWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.RNAstructureUI.windows.SequenceDisplayWindow
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`allowedChars`	`" \r\n\t-ACGTUacgtuxXN"`
`private static final java.lang.String`	`ignoreChars`	`" \r\n\t-"`
`private static final long`	`serialVersionUID`	`20120802L`
`private static final java.lang.String`	`standardBases`	`"ACGTU"`
`private static final java.lang.String`	`unpairedBases`	`"acgtu"`
`private static final java.lang.String`	`unspecifiedBases`	`"xXN"`

ur_rna.RNAstructureUI.windows.ur_rna.RNAstructureUI.windows.SequenceDisplayWindow.EditMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.ur_rna.RNAstructureUI.windows.SequenceDisplayWindow.SpeakMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.StochasticWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.RNAstructureUI.windows.TurboFoldWindow
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L

ur_rna.StructureEditor.*

ur_rna.StructureEditor.AppActions
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`FEEDBACK_SECRET`	`"18qY19wP21fR21uCuL1v"`
`private static final java.lang.String`	`FEEDBACK_URL`	`"http://rna2.urmc.rochester.edu/RNAstructureWeb/feedback.php"`
`private static final java.lang.String`	`HELP_URL`	`"http://rna.urmc.rochester.edu/GUI/html/StructureEditor.html"`
`private static final java.lang.String`	`LOCAL_HELP_PAGE`	`"StructureEditor.html"`
`private static final java.lang.String`	`WEB_URL`	`"http://rna.urmc.rochester.edu/"`

ur_rna.StructureEditor.MainFrame
Modifier and Type	Constant Field	Value
`public static final int`	`EditMenuSection`	`-80`
`public static final int`	`FileMenuSection`	`-100`
`public static final int`	`FormatMenuSection`	`-20`
`public static final int`	`HelpMenuSection`	`1000`
`public static final int`	`SettingsMenuSection`	`900`
`public static final int`	`ViewMenuSection`	`-40`
`public static final int`	`WindowsMenuSection`	`910`

ur_rna.StructureEditor.Program
Modifier and Type	Constant Field	Value
`public static final java.lang.String`	`APPNAME`	`"RNAeditor"`
`public static final java.lang.String`	`C_YEAR`	`"2016 - 2017"`
`public static final java.lang.String`	`RESOURCES`	`"/ur_rna/StructureEditor/resources/"`
`public static final java.lang.String`	`TITLE`	`"Structure Editor"`
`public static final int`	`VERSION_MAJOR`	`1`
`public static final int`	`VERSION_MINOR`	`0`

ur_rna.StructureEditor.Settings
Modifier and Type Constant Field Value

private static final java.lang.String nullValue "{~NULL}"

ur_rna.StructureEditor.menus.FileMenu
Modifier and Type	Constant Field	Value
`public static final int`	`BOTTOM_POS`	`10000`
`public static final int`	`CLOSE_FILE_POS`	`-70`
`public static final int`	`OPEN_FILE_POS`	`-100`
`public static final int`	`SAVE_FILE_POS`	`-80`

ur_rna.StructureEditor.menus.MainMenu
Modifier and Type Constant Field Value

private static final long serialVersionUID 20160315L

ur_rna.StructureEditor.models.IScreenObject
Modifier and Type Constant Field Value

public static final int ZORDER_MAX 2147483647

public static final int ZORDER_MIN -2147483648
ur_rna.StructureEditor.models.StrandList
Modifier and Type Constant Field Value

static final int NO_REINDEX 2147483647

ur_rna.StructureEditor.services.RnaDrawController
Modifier and Type	Constant Field	Value
`private static final double`	`minBiasRange`	`2.0943951023931953`
`private static final double`	`stickyRotationEpsilon`	`0.08726646259971647`

ur_rna.StructureEditor.services.ur_rna.StructureEditor.services.RnaDrawController.MouseHandler
Modifier and Type	Constant Field	Value
`static final int`	`DRAGGING`	`2`
`static final int`	`EDITING`	`3`
`static final int`	`minDragDistSq`	`0`
`static final int`	`SELECTING`	`1`

ur_rna.StructureEditor.services.ur_rna.StructureEditor.services.RnaDrawController.ScreenNuc
Modifier and Type	Constant Field	Value
`final float`	`OUTLINE_WIDTH`	`0.5f`
`public final int`	`selectionBorder`	`3`

ur_rna.StructureEditor.services.SceneColorizer.ColorMode
Modifier and Type	Constant Field	Value
`public static final int`	`Bond`	`8`
`public static final int`	`Fill`	`1`
`public static final int`	`None`	`0`
`public static final int`	`Outline`	`4`
`public static final int`	`Text`	`2`

ur_rna.StructureEditor.services.UserPrefs
Modifier and Type Constant Field Value

public static final java.lang.String DEFAULT_USER "default"

ur_rna.StructureEditor.services.drawing.DrawHandle
Modifier and Type Constant Field Value

public static final float SNAP_DISTANCE 6.0f

ur_rna.StructureEditor.services.drawing.export.PageSize
Modifier and Type Constant Field Value

public static final double MM_PER_INCH 25.4

ur_rna.StructureEditor.services.drawing.export.SvgGraphicsExporter
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`CHARSET_UTF8`	`"UTF-8"`
`private static final java.lang.String`	`SVG_DOCTYPE_NAME`	`"svg"`
`private static final java.lang.String`	`SVG_DOCTYPE_PUBLIC_ID`	`"-//W3C//DTD SVG 1.1//EN"`
`private static final java.lang.String`	`SVG_DOCTYPE_SYSTEM_ID`	`"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd"`
`private static final java.lang.String`	`SVG_NAMESPACE_URI`	`"http://www.w3.org/2000/svg"`
`private static final java.lang.String`	`XLINK_NAMESPACE`	`"xlink"`
`private static final java.lang.String`	`XLINK_NAMESPACE_URI`	`"http://www.w3.org/1999/xlink"`

ur_rna.StructureEditor.services.fileIO.ur_rna.StructureEditor.services.fileIO.DrawingFileIO.CTE
Modifier and Type	Constant Field	Value
`public static final java.lang.String`	`BOND_COLOR`	`"BC"`
`public static final java.lang.String`	`BOND_TYPE`	`"B"`
`public static final java.lang.String`	`FILL_COLOR`	`"FC"`
`public static final java.lang.String`	`FONT`	`"FS"`
`public static final java.lang.String`	`LINE_COLOR`	`"LC"`
`public static final int`	`PAD_COLOR`	`7`
`public static final int`	`PAD_FONT`	`10`
`public static final int`	`PAD_INDEX`	`4`
`public static final int`	`PAD_LOC`	`6`
`public static final int`	`PAD_SYMBOL`	`-4`
`public static final int`	`PAD_TOTAL`	`5`
`public static final java.lang.String`	`PROP_SEPARATOR`	`";!"`
`public static final java.lang.String`	`TEXT_COLOR`	`"TC"`
`public static final java.lang.String`	`X`	`"X"`
`public static final java.lang.String`	`Y`	`"Y"`

ur_rna.StructureEditor.services.fileIO.ur_rna.StructureEditor.services.fileIO.DrawingFileIO.NSD
Modifier and Type	Constant Field	Value
`public static final java.lang.String`	`BOND_NUCS`	`"Pair"`
`public static final java.lang.String`	`BOND_TYPE`	`"Type"`
`public static final java.lang.String`	`BONDS`	`"Pairs"`
`public static final java.lang.String`	`DRAW_FLIP`	`"Flip"`
`public static final java.lang.String`	`DRAW_MODE`	`"Mode"`
`public static final float`	`LOC_ZERO`	`0.0f`
`public static final java.lang.String`	`NUC_ID`	`"ID"`
`public static final java.lang.String`	`NUC_NUMBER`	`"HNum"`
`public static final java.lang.String`	`NUC_SYMBOL`	`"Base"`
`public static final java.lang.String`	`STRAND_NUCS`	`"Strand"`
`public static final java.lang.String`	`STRANDS`	`"Strands"`
`public static final java.lang.String`	`STYLE`	`"Style"`
`public static final java.lang.String`	`STYLE_BOND`	`"Bond"`
`public static final java.lang.String`	`STYLE_FILL`	`"Fill"`
`public static final java.lang.String`	`STYLE_FONT`	`"Font"`
`public static final java.lang.String`	`STYLE_LINE`	`"Line"`
`public static final java.lang.String`	`STYLE_TEXT`	`"Color"`
`public static final java.lang.String`	`STYLES`	`"Styles"`
`public static final java.lang.String`	`TITLE`	`"Title"`
`public static final int`	`UNSTYLED`	`-1`
`public static final java.lang.String`	`VERSION`	`"Version"`
`public static final java.lang.String`	`X`	`"X"`
`public static final java.lang.String`	`Y`	`"Y"`

ur_rna.StructureEditor.services.fileIO.ur_rna.StructureEditor.services.fileIO.DrawingFileIO.SimpleScanner
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`END_TOKEN`	`"(?=\\s\|$)"`

ur_rna.StructureEditor.services.fileIO.RnaFileIO
Modifier and Type	Constant Field	Value
`public static final java.lang.String`	`ALPHABET_RNA`	`"rna"`
`public static final char`	`InterMolecularBreakChar`	`73`
`public static final java.lang.String`	`InterMolecularBreakStr`	`"III"`
`public static final int`	`MAX_SEQUENCE_LENGTH`	`10000`
`public static final int`	`SEQUENCE_FMT_FASTA`	`2`
`public static final int`	`SEQUENCE_FMT_SEQ`	`1`
`public static final int`	`SEQUENCE_FMT_TEXT`	`0`

ur_rna.StructureEditor.ui.DrawPanel
Modifier and Type Constant Field Value

private final int MARGIN 5

private static final int ZOOM_MASK 128

ur_rna.StructureEditor.windows.DashboardFrame
Modifier and Type Constant Field Value

public static final java.lang.String EXAMPLE_INDICATOR "example://"

ur_rna.StructureEditor.windows.ur_rna.StructureEditor.windows.NewFileWindow.StructItem
Modifier and Type	Constant Field	Value
`public static final int`	`BP`	`2`
`public static final int`	`DOT`	`3`
`public static final int`	`ERROR`	`0`
`public static final int`	`HELIX`	`1`

ur_rna.Utilities.*

ur_rna.Utilities.CharConstants
Modifier and Type	Constant Field	Value
`public static final char`	`ALERT`	`7`
`public static final char`	`BACK_SLASH`	`92`
`public static final char`	`BKSP`	`8`
`public static final char`	`CR`	`13`
`public static final java.lang.String`	`CRLF`	`"\r\n"`
`public static final char`	`DBL_QUOT`	`39`
`public static final char`	`DEL`	`127`
`public static final char`	`ESC`	`27`
`public static final char`	`FF`	`12`
`public static final int`	`HEX_RADIX`	`16`
`public static final char`	`LAST_ASCII`	`255`
`public static final char`	`LF`	`10`
`public static final char`	`NUL`	`0`
`public static final char`	`SLASH`	`47`
`public static final char`	`SNG_QUOT`	`34`
`public static final char`	`SP`	`32`
`public static final char`	`TAB`	`9`
`public static final char`	`UPPER_ASCII`	`128`

ur_rna.Utilities.CharType
Modifier and Type	Constant Field	Value
`public static final int`	`ALL`	`-1`
`public static final int`	`ALPHA`	`5120`
`public static final int`	`ALPHA_NUM`	`7168`
`public static final int`	`BACKSLASH`	`524288`
`public static final int`	`COMMA`	`2097152`
`public static final int`	`CONTROL`	`1`
`public static final int`	`DECIMAL_NUMBER`	`3147776`
`public static final int`	`DIGITS`	`2048`
`public static final int`	`DOT`	`1048576`
`public static final int`	`DOUBLE_QUOTES`	`131072`
`public static final int`	`EXT_ASCII`	`536870912`
`public static final int`	`LOWER_ALPHA`	`4096`
`public static final int`	`MISC_SYMBOLS`	`134217728`
`public static final int`	`NEWLINE`	`32`
`public static final int`	`NON_PRINTABLE`	`49`
`public static final int`	`NONE`	`0`
`public static final int`	`PUNCTUATION`	`3145728`
`public static final int`	`QUOTES`	`196608`
`public static final int`	`SINGLE_QUOTE`	`65536`
`public static final int`	`SLASH`	`262144`
`public static final int`	`SPACE`	`256`
`public static final int`	`SYMBOLS`	`268369920`
`public static final int`	`TAB`	`16`
`public static final int`	`UNDERSCORE`	`4194304`
`public static final int`	`UPPER_ALPHA`	`1024`
`public static final int`	`WHITESPACE`	`304`
`public static final int`	`WORD_CHARS`	`4199424`

ur_rna.Utilities.Constants
Modifier and Type Constant Field Value

public static final int HEX_RADIX 16

public static final int OCTAL_RADIX 8

ur_rna.Utilities.ur_rna.Utilities.ConverterFilter.FilterIterator
Modifier and Type	Constant Field	Value
`private static final int`	`AT_END`	`-1`
`private static final int`	`AWAITING_CONSUMER`	`1`
`private static final int`	`ITERATING`	`0`

ur_rna.Utilities.DateHelper
Modifier and Type	Constant Field	Value
`public static final int`	`EN_US`	`4`
`public static final java.lang.String`	`EN_US_Format`	`"MM/dd/yyyy HH:mm:ss"`
`public static final int`	`FileDate`	`2`
`public static final java.lang.String`	`FileDateFormat`	`"yyyy-MM-dd"`
`public static final int`	`FileDateTime`	`3`
`public static final java.lang.String`	`FileDateTimeFormat`	`"yyyy-MM-dd.HHmmss"`
`public static final int`	`ISO8601`	`1`
`public static final java.lang.String`	`ISO8601Format`	`"yyyy-MM-dd\'T\'HH:mm:ss"`

ur_rna.Utilities.ur_rna.Utilities.ExtendedBufferedReader
Modifier and Type	Constant Field	Value
`public static final int`	`CR`	`10`
`private static final int`	`defaultGuessLineLength`	`256`
`public static final int`	`EOF`	`-1`
`public static final int`	`LF`	`13`
`public static final int`	`UNKNOWN`	`-2`

ur_rna.Utilities.ExtensibleException
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L

ur_rna.Utilities.ur_rna.Utilities.Filter.FilterIterator
Modifier and Type	Constant Field	Value
`private static final int`	`AT_END`	`-1`
`private static final int`	`AWAITING_CONSUMER`	`1`
`private static final int`	`ITERATING`	`0`

ur_rna.Utilities.FormatterException
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L
ur_rna.Utilities.JniLoader.NativeLibLoadError
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L
ur_rna.Utilities.KeyAlreadyExistsException
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L
ur_rna.Utilities.OSInfo
Modifier and Type Constant Field Value

private static final long serialVersionUID 20120802L
ur_rna.Utilities.ResourceLoader
Modifier and Type Constant Field Value

protected static final char pathSep 47

ur_rna.Utilities.SimpleDataSerializer
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`END_TOKEN`	`"(?=\\s\|[:{}()\\[\\]\"]\|$)"`
`private static final int`	`STRING_ESCAPE_OPTIONS`	`655360`

ur_rna.Utilities.StringBuilderEx
Modifier and Type Constant Field Value

static final long serialVersionUID 42L
ur_rna.Utilities.Strings
Modifier and Type Constant Field Value

public static final int DefaultBufferSize 4096
ur_rna.Utilities.SyntaxErrorException
Modifier and Type Constant Field Value

private static final long serialVersionUID 1L

ur_rna.Utilities.geom.Ellipses
Modifier and Type Constant Field Value

public static final double toScreenDegrees -57.29577951308232
ur_rna.Utilities.geom.Matrix3D
Modifier and Type Constant Field Value

private static final double EPSILON 1.110223024E-16

static final long serialVersionUID 20160913L
ur_rna.Utilities.geom.Vec2D
Modifier and Type Constant Field Value

private static final double toStringRoundFactor 1.0E7

public static final double TwoPI 6.283185307179586

ur_rna.Utilities.swing.FileDialog
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`DEFAULT_CONTEXT`	`"(default)"`
`public static final java.lang.String`	`PREFS`	`"recent-file-locations"`

ur_rna.Utilities.swing.FontUtil
Modifier and Type Constant Field Value

private static final java.lang.String FONT_TEST_STRING "The quick brown fox jumps over the lazy dog"
ur_rna.Utilities.swing.FormValidationException
Modifier and Type Constant Field Value

private static final long serialVersionUID 20170810L

ur_rna.Utilities.swing.IMergeItem
Modifier and Type	Constant Field	Value
`public static final int`	`MergePosDefault`	`0`
`public static final int`	`MergePosInitial`	`-2147483647`
`public static final int`	`MergePosInvalid`	`-2147483647`
`public static final int`	`MergePosMax`	`2147483647`
`public static final int`	`MergePosMin`	`-2147483632`

ur_rna.Utilities.swing.UiAction
Modifier and Type Constant Field Value

public static final java.lang.String TEXT_KEY "HandlerTextKey"

ur_rna.Utilities.swing.WaitDialog
Modifier and Type	Constant Field	Value
`private static final java.lang.String`	`DEFAULT_MESSAGE`	`"Operation in progress. Please wait..."`
`private static final java.lang.String`	`DEFAULT_TITLE`	`"Please wait..."`

Modifier and Type	Constant Field	Value
`protected final int`	`columnWidth`	`350`
`private static final long`	`serialVersionUID`	`20120802L`

Modifier and Type	Constant Field	Value
`public static final int`	`ZORDER_MAX`	`2147483647`
`public static final int`	`ZORDER_MIN`	`-2147483648`

Modifier and Type	Constant Field	Value
`private final int`	`MARGIN`	`5`
`private static final int`	`ZOOM_MASK`	`128`

Modifier and Type	Constant Field	Value
`private static final double`	`EPSILON`	`1.110223024E-16`
`static final long`	`serialVersionUID`	`20160913L`

Modifier and Type	Constant Field	Value
`private static final double`	`toStringRoundFactor`	`1.0E7`
`public static final double`	`TwoPI`	`6.283185307179586`

Constant Field Values

Contents

ur_rna.GUITester.*

ur_rna.RNAstructure.*

ur_rna.RNAstructureUI.*

ur_rna.StructureEditor.*

ur_rna.Utilities.*