RNAstructure efn2 Results
(Calculate the folding free energy of structures in a CT file.)

Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    3:20 4:19 5:18 6:17 7:16
	Energy of Broken Structure: -10.7
	Energy of Pseudo-Helices:   -10.9
	Pseudoknot Energy Penalty:  7.4
	Total Free Energy:          -14.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -2.0
		Stack = -3.8  for stack of 9-34
		Stack = -2.4  for stack of 10-33
		Stack = -1.5  for stack of 11-32
		Stack = -1.4  for stack of 12-31
		Stack = -2.4  for stack of 13-30
		Stack = -2.8  for stack of 14-29
	Helix total = -14.3
	Hairpin = 5.6  for closure of 15-28


	Total energy = -10.7

Download this file: efn2.txt

Command Line:
efn2 2tpk.ct efn2.txt --temperature 298.15 --writedetails

RNAstructure

Web Servers for RNA Secondary Structure Prediction

RNAstructure efn2 Results(Calculate the folding free energy of structures in a CT file.)

RNAstructure efn2 Results
(Calculate the folding free energy of structures in a CT file.)