Pseudoknot Energy Details for Structure 1: Knotted Pairs: 3:20 4:19 5:18 6:17 7:16 Energy of Broken Structure: -10.7 Energy of Pseudo-Helices: -10.9 Pseudoknot Energy Penalty: 7.4 Total Free Energy: -14.2 Details follow for Broken (Pseudoknot-free) Structure. Thermodynamic details for structure # 1 Exterior loop = -2.0 Stack = -3.8 for stack of 9-34 Stack = -2.4 for stack of 10-33 Stack = -1.5 for stack of 11-32 Stack = -1.4 for stack of 12-31 Stack = -2.4 for stack of 13-30 Stack = -2.8 for stack of 14-29 Helix total = -14.3 Hairpin = 5.6 for closure of 15-28 Total energy = -10.7