DrawWindow

java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - javax.swing.JInternalFrame
      - ur_rna.Utilities.swing.MdiChildFrame
        
        ur_rna.StructureEditor.windows.ChildFrame
        
        ur_rna.StructureEditor.windows.DrawWindow

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants
```
public class DrawWindow
extends ChildFrame
```
Basic child window for drawing.

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

private static class DrawWindow.SceneInfo

static class DrawWindow.ToolButtonList
- Nested classes/interfaces inherited from class javax.swing.JInternalFrame
  javax.swing.JInternalFrame.AccessibleJInternalFrame, javax.swing.JInternalFrame.JDesktopIcon
- Nested classes/interfaces inherited from class javax.swing.JComponent
  javax.swing.JComponent.AccessibleJComponent
- Nested classes/interfaces inherited from class java.awt.Container
  java.awt.Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Nested Classes
Modifier and Type	Class and Description
`private static class`	`DrawWindow.SceneInfo`
`static class`	`DrawWindow.ToolButtonList`

Field Summary

Fields
Modifier and Type	Field and Description
`private RnaFileIO.AsyncTask`	`_asyncTask`
`(package private) UiAction`	`actionBreakBonds`
`(package private) UiAction`	`actionChooseStructure`
`(package private) UiAction`	`actionClose`
`(package private) UiAction`	`actionColorHelices`
`(package private) UiAction`	`actionEditNucs`
`(package private) UiAction`	`actionEditRedo`
`(package private) UiAction`	`actionEditUndo`
`(package private) UiAction`	`actionExport`
`(package private) UiAction`	`actionFlipScene`
`(package private) UiAction`	`actionFold`
`(package private) UiAction`	`actionFormatColor`
`(package private) UiAction`	`actionFormatRemoveAllColor`
`(package private) UiAction`	`actionFormatRemoveColor`
`(package private) UiAction`	`actionIdentifyPseudoKnots`
`(package private) UiAction`	`actionInsertNucs`
`(package private) UiAction`	`actionJoinStrands`
`(package private) UiAction`	`actionLocalRedraw`
`(package private) UiAction`	`actionNextStructure`
`(package private) UiAction`	`actionPrevStructure`
`(package private) UiAction`	`actionRedraw`
`(package private) UiAction`	`actionRedrawCirc`
`(package private) UiAction`	`actionRedrawLinear`
`(package private) UiAction`	`actionRemoveNucs`
`(package private) UiAction`	`actionSave`
`(package private) UiAction`	`actionSaveAs`
`(package private) UiAction`	`actionSelectAll`
`(package private) UiAction`	`actionSelectBranch`
`(package private) UiAction`	`actionSelectExpand`
`(package private) UiAction`	`actionSelectHelix`
`(package private) UiAction`	`actionSelectNuc`
`(package private) UiAction`	`actionSetBondTypeBanned`
`(package private) UiAction`	`actionSetBondTypeForced`
`(package private) UiAction`	`actionSetBondTypeNormal`
`(package private) UiAction`	`actionSetBondTypePseduo`
`(package private) UiAction`	`actionSetBondTypeSpecial`
`(package private) UiAction`	`actionShowEnergy`
`(package private) UiAction`	`actionSplitStrand`
`(package private) UiAction`	`actionZoomAuto`
`(package private) UiAction`	`actionZoomIn`
`(package private) UiAction`	`actionZoomOut`
`(package private) UiAction`	`actionZoomReset`
`private javax.swing.Timer`	`asyncUpdateTimer`
`private javax.swing.AbstractButton`	`btnSelModeBranch`
`private javax.swing.AbstractButton`	`btnSelModeHelix`
`private javax.swing.AbstractButton`	`btnSelModeNuc`
`RnaDrawController`	`controller`
`private RnaScene`	`currentScene`
`private DrawSettings`	`drawSettings`
`private MergeMenu`	`formatBondType`
`private NucLayout`	`layout`
`private javax.swing.JLabel`	`lblTaskProgress`
`private javax.swing.JLabel`	`lblTaskStatus`
`private java.util.List<MergeMenu>`	`menus`
`private DrawPanel`	`panel`
`private javax.swing.JPanel`	`pnlTaskProgress`
`private javax.swing.JProgressBar`	`prgTaskProgress`
`private DrawWindow.SceneInfo[]`	`sceneInfo`
`private RnaSceneGroup`	`scenes`
`private javax.swing.JScrollPane`	`scrollPane`
`(package private) RnaDrawController.SelectionType`	`selType`
`private ButtonGroupList`	`structureList`
`private MergeMenu`	`structureMenu`
`private javax.swing.JButton`	`structureMenuToolbarButton`
`(package private) UiAction`	`testAction`
`private DrawWindow.ToolButtonList`	`toolButtons`

Fields inherited from class javax.swing.JInternalFrame
closable, CONTENT_PANE_PROPERTY, desktopIcon, FRAME_ICON_PROPERTY, frameIcon, GLASS_PANE_PROPERTY, iconable, IS_CLOSED_PROPERTY, IS_ICON_PROPERTY, IS_MAXIMUM_PROPERTY, IS_SELECTED_PROPERTY, isClosed, isIcon, isMaximum, isSelected, LAYERED_PANE_PROPERTY, maximizable, MENU_BAR_PROPERTY, resizable, ROOT_PANE_PROPERTY, rootPane, rootPaneCheckingEnabled, title, TITLE_PROPERTY

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor and Description

DrawWindow()

Constructors
Constructor and Description
`DrawWindow()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`private void`	`asyncTimer_elapsed()`
`void`	`autoScale()`
`private void`	`buildStructureMenu()`
`void`	`colorizeScenes(SceneColorizer c, boolean applyToAllScenes, boolean selectedBasesOnly)`
`private void`	`createMenus()`
`private void`	`createToolButtons()`
`private void`	`createUI()`
`void`	`editSelectedBases()`
`private void`	`findHelices()`
`private void`	`findPseudoKnots()`
`private void`	`findPseudoKnotsBackend()`
`private void`	`foldSequence()`
`RnaScene`	`getCurrentScene()`
`private int`	`getCurrentSceneIndex()`
`java.util.Collection<? extends javax.swing.JMenu>`	`getMenus()`
`private java.awt.Rectangle`	`getSceneBounds(boolean includeInteractive)`
`RnaSceneGroup`	`getScenes()`
`java.util.Collection<? extends java.awt.Component>`	`getToolbarButtons()`
`private void`	`handleView(RnaScene scene, boolean save)`
`private void`	`insertBases()`
`private boolean`	`isTaskRunning()`
`void`	`loadFile(RnaSceneGroup file)`
`void`	`loadScene(RnaScene scene)`
`private void`	`loadSettings()`
`private void`	`loadStructure(int structureIndex)`
`private void`	`monitorAsyncTask(RnaFileIO.AsyncTask task)`
`private void`	`onHistoryUpdate(HistoryUpdateEvent event)`
`private void`	`onSceneUpdate(SceneUpdateEvent event)`
`void`	`programSettingsUpdated()` Called when Program Settings have changed.
`private void`	`redrawCircular()`
`private void`	`redrawLinear()`
`void`	`redrawScene()`
`private java.awt.Rectangle`	`renderFullSceneToImage(java.awt.Graphics2D imageGraphics, boolean opaque)`
`private void`	`save(FileType type, boolean forceSaveAs, boolean export)`
`private void`	`saveSceneAsRastorImage(java.lang.String path, FileType type)`
`private void`	`saveSceneAsVectorImage(java.lang.String path, FileType type)`
`void`	`setSelectedBondType(BondType type)`
`void`	`setSelMode(RnaDrawController.SelectionType selMode)`
`private void`	`setSelType(RnaDrawController.SelectionType selType)`
`void`	`showCalcEnergy()`
`private void`	`showColorizeDialog()`
`private void`	`showNextStructure()`
`private void`	`showPrevStructure()`
`private void`	`showStructureMenu()`
`private java.lang.String`	`strOrDefault(java.lang.String value, java.lang.String defaultIfEmpty)`
`private void`	`test()`
`private void`	`updateFileUI()`
`private void`	`updateSelectionUI()`

Methods inherited from class ur_rna.StructureEditor.windows.ChildFrame
close

Methods inherited from class ur_rna.Utilities.swing.MdiChildFrame
addAction, addKeyBinding, addKeyBinding, getParentFrame, setParentFrame

Methods inherited from class javax.swing.JInternalFrame
addImpl, addInternalFrameListener, createRootPane, dispose, doDefaultCloseAction, fireInternalFrameEvent, getAccessibleContext, getContentPane, getDefaultCloseOperation, getDesktopIcon, getDesktopPane, getFocusCycleRootAncestor, getFocusOwner, getFrameIcon, getGlassPane, getInternalFrameListeners, getJMenuBar, getLastCursor, getLayer, getLayeredPane, getMenuBar, getMostRecentFocusOwner, getNormalBounds, getRootPane, getTitle, getUI, getUIClassID, getWarningString, hide, isClosable, isClosed, isFocusCycleRoot, isIcon, isIconifiable, isMaximizable, isMaximum, isResizable, isRootPaneCheckingEnabled, isSelected, moveToBack, moveToFront, pack, paintComponent, paramString, remove, removeInternalFrameListener, reshape, restoreSubcomponentFocus, setClosable, setClosed, setContentPane, setCursor, setDefaultCloseOperation, setDesktopIcon, setFocusCycleRoot, setFrameIcon, setGlassPane, setIcon, setIconifiable, setJMenuBar, setLayer, setLayer, setLayeredPane, setLayout, setMaximizable, setMaximum, setMenuBar, setNormalBounds, setResizable, setRootPane, setRootPaneCheckingEnabled, setSelected, setTitle, setUI, show, toBack, toFront, updateUI

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

_asyncTask
```
private RnaFileIO.AsyncTask _asyncTask
```

actionBreakBonds
```
UiAction actionBreakBonds
```

actionChooseStructure
```
UiAction actionChooseStructure
```

actionClose
```
UiAction actionClose
```

actionColorHelices
```
UiAction actionColorHelices
```

actionEditNucs
```
UiAction actionEditNucs
```

actionEditRedo
```
UiAction actionEditRedo
```

actionEditUndo
```
UiAction actionEditUndo
```

actionExport
```
UiAction actionExport
```

actionFlipScene
```
UiAction actionFlipScene
```

actionFold
```
UiAction actionFold
```

actionFormatColor
```
UiAction actionFormatColor
```

actionFormatRemoveAllColor
```
UiAction actionFormatRemoveAllColor
```

actionFormatRemoveColor
```
UiAction actionFormatRemoveColor
```

actionIdentifyPseudoKnots
```
UiAction actionIdentifyPseudoKnots
```

actionInsertNucs
```
UiAction actionInsertNucs
```

actionJoinStrands
```
UiAction actionJoinStrands
```

actionLocalRedraw
```
UiAction actionLocalRedraw
```

actionNextStructure
```
UiAction actionNextStructure
```

actionPrevStructure
```
UiAction actionPrevStructure
```

actionRedraw
```
UiAction actionRedraw
```

actionRedrawCirc
```
UiAction actionRedrawCirc
```

actionRedrawLinear
```
UiAction actionRedrawLinear
```

actionRemoveNucs
```
UiAction actionRemoveNucs
```

actionSave
```
UiAction actionSave
```

actionSaveAs
```
UiAction actionSaveAs
```

actionSelectAll
```
UiAction actionSelectAll
```

actionSelectBranch
```
UiAction actionSelectBranch
```

actionSelectExpand
```
UiAction actionSelectExpand
```

actionSelectHelix
```
UiAction actionSelectHelix
```

actionSelectNuc
```
UiAction actionSelectNuc
```

actionSetBondTypeBanned
```
UiAction actionSetBondTypeBanned
```

actionSetBondTypeForced
```
UiAction actionSetBondTypeForced
```

actionSetBondTypeNormal
```
UiAction actionSetBondTypeNormal
```

actionSetBondTypePseduo
```
UiAction actionSetBondTypePseduo
```

actionSetBondTypeSpecial
```
UiAction actionSetBondTypeSpecial
```

actionShowEnergy
```
UiAction actionShowEnergy
```

actionSplitStrand
```
UiAction actionSplitStrand
```

actionZoomAuto
```
UiAction actionZoomAuto
```

actionZoomIn
```
UiAction actionZoomIn
```

actionZoomOut
```
UiAction actionZoomOut
```

actionZoomReset
```
UiAction actionZoomReset
```

asyncUpdateTimer

private javax.swing.Timer asyncUpdateTimer

btnSelModeBranch

private javax.swing.AbstractButton btnSelModeBranch

btnSelModeHelix

private javax.swing.AbstractButton btnSelModeHelix

btnSelModeNuc

private javax.swing.AbstractButton btnSelModeNuc

controller

public final RnaDrawController controller

currentScene
```
private RnaScene currentScene
```

drawSettings
```
private DrawSettings drawSettings
```

formatBondType
```
private MergeMenu formatBondType
```

layout
```
private NucLayout layout
```

lblTaskProgress

private javax.swing.JLabel lblTaskProgress

lblTaskStatus

private javax.swing.JLabel lblTaskStatus

menus

private java.util.List<MergeMenu> menus

panel
```
private DrawPanel panel
```

pnlTaskProgress

private javax.swing.JPanel pnlTaskProgress

prgTaskProgress

private javax.swing.JProgressBar prgTaskProgress

sceneInfo

private DrawWindow.SceneInfo[] sceneInfo

scenes
```
private RnaSceneGroup scenes
```

scrollPane

private javax.swing.JScrollPane scrollPane

selType
```
RnaDrawController.SelectionType selType
```

structureList
```
private ButtonGroupList structureList
```

structureMenu
```
private MergeMenu structureMenu
```

structureMenuToolbarButton

private javax.swing.JButton structureMenuToolbarButton

testAction
```
UiAction testAction
```

toolButtons

private DrawWindow.ToolButtonList toolButtons

Constructor Detail
- DrawWindow
```
public DrawWindow()
```

Method Detail

asyncTimer_elapsed
```
private void asyncTimer_elapsed()
```

autoScale
```
public void autoScale()
```

buildStructureMenu
```
private void buildStructureMenu()
```

colorizeScenes

public void colorizeScenes(SceneColorizer c,
                           boolean applyToAllScenes,
                           boolean selectedBasesOnly)

createMenus
```
private void createMenus()
```

createToolButtons
```
private void createToolButtons()
```

createUI
```
private void createUI()
```

editSelectedBases
```
public void editSelectedBases()
```

findHelices
```
private void findHelices()
```

findPseudoKnots
```
private void findPseudoKnots()
```

findPseudoKnotsBackend
```
private void findPseudoKnotsBackend()
```

foldSequence
```
private void foldSequence()
```

getCurrentScene
```
public RnaScene getCurrentScene()
```

getCurrentSceneIndex
```
private int getCurrentSceneIndex()
```

getMenus

public java.util.Collection<? extends javax.swing.JMenu> getMenus()

Overrides:: getMenus in class ChildFrame

getSceneBounds

private java.awt.Rectangle getSceneBounds(boolean includeInteractive)

getScenes
```
public RnaSceneGroup getScenes()
```

getToolbarButtons

public java.util.Collection<? extends java.awt.Component> getToolbarButtons()

Overrides:: getToolbarButtons in class ChildFrame

handleView

private void handleView(RnaScene scene,
                        boolean save)

insertBases
```
private void insertBases()
```

isTaskRunning
```
private boolean isTaskRunning()
```

loadFile

public void loadFile(RnaSceneGroup file)

loadScene

public void loadScene(RnaScene scene)

loadSettings
```
private void loadSettings()
```

loadStructure

private void loadStructure(int structureIndex)

monitorAsyncTask

private void monitorAsyncTask(RnaFileIO.AsyncTask task)

onHistoryUpdate

private void onHistoryUpdate(HistoryUpdateEvent event)

onSceneUpdate

private void onSceneUpdate(SceneUpdateEvent event)

programSettingsUpdated
```
public void programSettingsUpdated()
```
Description copied from class: ChildFrame

Called when Program Settings have changed. ChildFrame descendants can override this to perform custom updates as necessary.

Overrides:

programSettingsUpdated in class ChildFrame

redrawCircular
```
private void redrawCircular()
```

redrawLinear
```
private void redrawLinear()
```

redrawScene
```
public void redrawScene()
```

renderFullSceneToImage

private java.awt.Rectangle renderFullSceneToImage(java.awt.Graphics2D imageGraphics,
                                                  boolean opaque)

save

private void save(FileType type,
                  boolean forceSaveAs,
                  boolean export)

saveSceneAsRastorImage

private void saveSceneAsRastorImage(java.lang.String path,
                                    FileType type)
                             throws java.io.IOException

Throws:: java.io.IOException

saveSceneAsVectorImage

private void saveSceneAsVectorImage(java.lang.String path,
                                    FileType type)
                             throws java.io.IOException

Throws:: java.io.IOException

setSelectedBondType

public void setSelectedBondType(BondType type)

setSelMode

public void setSelMode(RnaDrawController.SelectionType selMode)

setSelType

private void setSelType(RnaDrawController.SelectionType selType)

showCalcEnergy
```
public void showCalcEnergy()
```

showColorizeDialog
```
private void showColorizeDialog()
```

showNextStructure
```
private void showNextStructure()
```

showPrevStructure
```
private void showPrevStructure()
```

showStructureMenu
```
private void showStructureMenu()
```

strOrDefault

private java.lang.String strOrDefault(java.lang.String value,
                                      java.lang.String defaultIfEmpty)

test
```
private void test()
```

updateFileUI
```
private void updateFileUI()
```

updateSelectionUI
```
private void updateSelectionUI()
```

Class DrawWindow

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JInternalFrame

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class javax.swing.JInternalFrame

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface javax.swing.WindowConstants

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class ur_rna.StructureEditor.windows.ChildFrame

Methods inherited from class ur_rna.Utilities.swing.MdiChildFrame

Methods inherited from class javax.swing.JInternalFrame

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

_asyncTask

actionBreakBonds

actionChooseStructure

actionClose

actionColorHelices

actionEditNucs

actionEditRedo

actionEditUndo

actionExport

actionFlipScene

actionFold

actionFormatColor

actionFormatRemoveAllColor

actionFormatRemoveColor

actionIdentifyPseudoKnots

actionInsertNucs

actionJoinStrands

actionLocalRedraw

actionNextStructure

actionPrevStructure

actionRedraw

actionRedrawCirc

actionRedrawLinear

actionRemoveNucs

actionSave

actionSaveAs

actionSelectAll

actionSelectBranch

actionSelectExpand

actionSelectHelix

actionSelectNuc

actionSetBondTypeBanned

actionSetBondTypeForced

actionSetBondTypeNormal

actionSetBondTypePseduo

actionSetBondTypeSpecial

actionShowEnergy

actionSplitStrand

actionZoomAuto

actionZoomIn

actionZoomOut

actionZoomReset

asyncUpdateTimer

btnSelModeBranch

btnSelModeHelix

btnSelModeNuc

controller

currentScene

drawSettings

formatBondType

layout

lblTaskProgress

lblTaskStatus

menus

panel

pnlTaskProgress

prgTaskProgress

sceneInfo