ur_rna.StructureEditor.services.fileIO

Class RnaFileIO.NucIndexConverter.DoubleStrand

java.lang.Object

ur_rna.StructureEditor.services.fileIO.RnaFileIO.NucIndexConverter

ur_rna.StructureEditor.services.fileIO.RnaFileIO.NucIndexConverter.DoubleStrand

Enclosing class:

RnaFileIO.NucIndexConverter

public static class RnaFileIO.NucIndexConverter.DoubleStrand
extends RnaFileIO.NucIndexConverter

Nested Class Summary

Nested classes/interfaces inherited from class ur_rna.StructureEditor.services.fileIO.RnaFileIO.NucIndexConverter

RnaFileIO.NucIndexConverter.DoubleStrand, RnaFileIO.NucIndexConverter.MultiStrand

Field Summary

Fields

Modifier and Type	Field and Description
(package private) int	linkerEnd
(package private) int	linkerStart

Fields inherited from class ur_rna.StructureEditor.services.fileIO.RnaFileIO.NucIndexConverter

SingleStrand

Constructor Summary

Constructors

Constructor and Description
DoubleStrand(int linkerStart, int linkerEnd)

Method Summary

Modifier and Type	Method and Description
int	getBackendIndex(Nuc sceneNuc)
Nuc	getSceneNuc(RnaScene scene, int backendIndex)

Methods inherited from class ur_rna.StructureEditor.services.fileIO.RnaFileIO.NucIndexConverter

create

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

linkerEnd

final int linkerEnd

linkerStart

final int linkerStart

Constructor Detail

DoubleStrand

public DoubleStrand(int linkerStart,
                    int linkerEnd)

Method Detail

getBackendIndex

public int getBackendIndex(Nuc sceneNuc)

Specified by:

getBackendIndex in class RnaFileIO.NucIndexConverter

getSceneNuc

public Nuc getSceneNuc(RnaScene scene,
                       int backendIndex)

Specified by:

getSceneNuc in class RnaFileIO.NucIndexConverter