ur_rna.RNAstructureUI.drawing.proxy

Class StructureBackend

java.lang.Object

ur_rna.RNAstructureUI.drawing.proxy.StructureBackend

public class StructureBackend
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	swigCMemOwn
private long	swigCPtr

Constructor Summary

Constructors

Modifier	Constructor and Description
	StructureBackend()
protected	StructureBackend(long cPtr, boolean cMemoryOwn)

Method Summary

Modifier and Type	Method and Description
boolean	addAnnotationProbability(java.lang.String file)
boolean	addAnnotationSHAPE(java.lang.String file)
void	delete()
protected void	finalize()
void	flip()
protected static long	getCPtr(StructureBackend obj)
int	getStructureCount()
java.lang.String	getStructureData(int number)
java.lang.String	readStructureData(java.lang.String file)
void	removeAnnotation()
void	setBackboneStyle(int style)
void	setFlipped(boolean flipped)
void	setNucleotidesCircled(boolean circled)
java.lang.String	writeDotBracketFile(java.lang.String inFile, java.lang.String outFile)
java.lang.String	writeHelixFile(java.lang.String inFile, java.lang.String outFile, int number)
void	writePostscriptFile(java.lang.String outFile, int number)
void	writeSVGFile(java.lang.String outFile, int number)

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

swigCMemOwn

protected transient boolean swigCMemOwn

swigCPtr

private transient long swigCPtr

Constructor Detail

StructureBackend

public StructureBackend()

StructureBackend

protected StructureBackend(long cPtr,
                           boolean cMemoryOwn)

Method Detail

addAnnotationProbability

public boolean addAnnotationProbability(java.lang.String file)

addAnnotationSHAPE

public boolean addAnnotationSHAPE(java.lang.String file)

delete

public void delete()

finalize

protected void finalize()

Overrides:

finalize in class java.lang.Object

flip

public void flip()

getCPtr

protected static long getCPtr(StructureBackend obj)

getStructureCount

public int getStructureCount()

getStructureData

public java.lang.String getStructureData(int number)

readStructureData

public java.lang.String readStructureData(java.lang.String file)

removeAnnotation

public void removeAnnotation()

setBackboneStyle

public void setBackboneStyle(int style)

setFlipped

public void setFlipped(boolean flipped)

setNucleotidesCircled

public void setNucleotidesCircled(boolean circled)

writeDotBracketFile

public java.lang.String writeDotBracketFile(java.lang.String inFile,
                                            java.lang.String outFile)

writeHelixFile

public java.lang.String writeHelixFile(java.lang.String inFile,
                                       java.lang.String outFile,
                                       int number)

writePostscriptFile

public void writePostscriptFile(java.lang.String outFile,
                                int number)

writeSVGFile

public void writeSVGFile(java.lang.String outFile,
                         int number)