ur_rna.RNAstructure.backend

Class TwoRNA

java.lang.Object

ur_rna.RNAstructure.backend.TwoRNA

Direct Known Subclasses:

Dynalign_object

public class TwoRNA
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	swigCMemOwn
private long	swigCPtr

Constructor Summary

Constructors

Modifier	Constructor and Description
	TwoRNA()
protected	TwoRNA(long cPtr, boolean cMemoryOwn)
	TwoRNA(java.lang.String filename1, int type1, java.lang.String filename2, int type2)
	TwoRNA(java.lang.String filename1, int type1, java.lang.String filename2, int type2, boolean IsRNA)
	TwoRNA(java.lang.String filename1, int type1, java.lang.String filename2, int type2, Thermodynamics copyThermo)
	TwoRNA(java.lang.String sequence1, java.lang.String sequence2)
	TwoRNA(java.lang.String sequence1, java.lang.String sequence2, boolean IsRNA)

Method Summary

Modifier and Type	Method and Description
void	delete()
protected void	finalize()
java.lang.String	getCompoundmessage()
protected static long	getCPtr(TwoRNA obj)
int	GetErrorCode()
java.lang.String	GetErrorDetails()
java.lang.String	GetErrorMessage(int error)
java.lang.String	GetErrorMessageString(int error)
RNA	GetRNA1()
RNA	GetRNA2()
double	GetTemperature()
void	ResetError()
void	setCompoundmessage(java.lang.String value)
void	SetErrorDetails(java.lang.String details)
int	SetTemperature(double temperature)

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

swigCMemOwn

protected transient boolean swigCMemOwn

swigCPtr

private transient long swigCPtr

Constructor Detail

TwoRNA

public TwoRNA()

TwoRNA

protected TwoRNA(long cPtr,
                 boolean cMemoryOwn)

TwoRNA

public TwoRNA(java.lang.String filename1,
              int type1,
              java.lang.String filename2,
              int type2)

TwoRNA

public TwoRNA(java.lang.String filename1,
              int type1,
              java.lang.String filename2,
              int type2,
              boolean IsRNA)

TwoRNA

public TwoRNA(java.lang.String filename1,
              int type1,
              java.lang.String filename2,
              int type2,
              Thermodynamics copyThermo)

TwoRNA

public TwoRNA(java.lang.String sequence1,
              java.lang.String sequence2)

TwoRNA

public TwoRNA(java.lang.String sequence1,
              java.lang.String sequence2,
              boolean IsRNA)

Method Detail

delete

public void delete()

finalize

protected void finalize()

Overrides:

finalize in class java.lang.Object

getCompoundmessage

public java.lang.String getCompoundmessage()

getCPtr

protected static long getCPtr(TwoRNA obj)

GetErrorCode

public int GetErrorCode()

GetErrorDetails

public java.lang.String GetErrorDetails()

GetErrorMessage

public java.lang.String GetErrorMessage(int error)

GetErrorMessageString

public java.lang.String GetErrorMessageString(int error)

GetRNA1

public RNA GetRNA1()

GetRNA2

public RNA GetRNA2()

GetTemperature

public double GetTemperature()

ResetError

public void ResetError()

setCompoundmessage

public void setCompoundmessage(java.lang.String value)

SetErrorDetails

public void SetErrorDetails(java.lang.String details)

SetTemperature

public int SetTemperature(double temperature)