ur_rna.RNAstructure.backend

Class RNABackend

java.lang.Object

ur_rna.RNAstructure.backend.RNABackend

All Implemented Interfaces:

RNABackendConstants

public class RNABackend
extends java.lang.Object
implements RNABackendConstants

Field Summary

Fields inherited from interface ur_rna.RNAstructure.backend.RNABackendConstants

COMPOUNDMESSAGELENGTH, DBN_BIT_MULTI_SEQ, DBN_BIT_MULTI_TITLE, DBN_BIT_SEQ_LABEL, DBN_BIT_SIDE_TITLES, DEFAULT_SHAPE_INTERCEPT, DEFAULT_SHAPE_SLOPE, FILE_CT, FILE_DBN, FILE_PFS, FILE_SAV, FILE_SEQ, SEQUENCE_STRING

Constructor Summary

Constructors

Constructor and Description
RNABackend()

Method Summary

Modifier and Type	Method and Description
static void	findPseudoknots(CIntVector currentPairs)
static void	findPseudoknots(CIntVector currentPairs, CIntVector pseudoknotPairs)
static void	findPseudoknots(CIntVector currentPairs, CIntVector pseudoknotPairs, CIntVector normalPairs)
static java.lang.String	getDataPath()
static java.lang.String	getDataPath(java.lang.String defaultPath)
static boolean	hasPseudoknots(CIntVector pairs)
static void	setDataPath(java.lang.String path)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RNABackend

public RNABackend()

Method Detail

findPseudoknots

public static void findPseudoknots(CIntVector currentPairs)

findPseudoknots

public static void findPseudoknots(CIntVector currentPairs,
                                   CIntVector pseudoknotPairs)

findPseudoknots

public static void findPseudoknots(CIntVector currentPairs,
                                   CIntVector pseudoknotPairs,
                                   CIntVector normalPairs)

getDataPath

public static java.lang.String getDataPath()

getDataPath

public static java.lang.String getDataPath(java.lang.String defaultPath)

hasPseudoknots

public static boolean hasPseudoknots(CIntVector pairs)

setDataPath

public static void setDataPath(java.lang.String path)