ur_rna.StructureEditor

Enum FileType

java.lang.Object

java.lang.Enum<FileType>

ur_rna.StructureEditor.FileType

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<FileType>

public enum FileType
extends java.lang.Enum<FileType>

Enum Constant Summary

Enum Constants

Enum Constant and Description
Alignment Alignment file.
AnyOpenable
AnySaveable
Constraints Constraints file.
CT CT (Connection Table) structure file.
CteDrawing Extended CT format.
DotBracket Dot-Bracket file.
DotPlot Dot plot file.
Drawing
DynalignSav Select a Dynalign save file.
Fasta FASTA Sequence file
FoldingSav Select a folding save file.
GIF
Helix Helix format.
Image
JPEG
NsdDrawing Native structure drawing format.
OligoList Select an oligo list file.
OUT Select a general OUT file.
PartitionSav Select a partition function save file.
PNG
Postscript Postscript (PS) file.
Report Oligo report file.
Seq SEQ Sequence file
SeqGenbank GenBank Flat File Format e.g.: https://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html
SeqText Plain text Sequence file
Sequence
SHAPE SHAPE chemical modification file.
Structure
SVG Scalable Vector Graphics (SVG) File
VectorImage

Field Summary

Fields

Modifier and Type	Field and Description
static java.util.List<FileType>	allTypes
private java.lang.String	description
private java.lang.String	extensions
static java.util.Map<java.lang.String,FileType>	extMap
static java.util.List<FileType>	primaryTypes
private java.util.Set<FileType>	subTypes

Method Summary

Modifier and Type	Method and Description
private void	addExtensions(java.lang.StringBuilder sb)
void	addFilterString(java.lang.StringBuilder sb)
java.lang.String	firstExtension()
static FileType	fromAny(java.lang.String typeName, java.lang.String extension, java.lang.String description, java.lang.String filePath, FileType defaultValue)
static FileType	fromDesc(java.lang.String description)
static FileType	fromExt(java.lang.String ext)
static FileType	fromFilter(javax.swing.filechooser.FileFilter filter)
static FileType	fromName(java.lang.String typeName)
java.lang.String	getDescription()
java.lang.String[]	getExtensions()
java.lang.String	getFilterString()
java.lang.String	getFilterString(boolean splitSubTypes)
boolean	includes(FileType childType)
boolean	isSubTypeOf(FileType... parentTypes)
java.util.Set<FileType>	subTypes()
java.lang.String	toString()
static FileType	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static FileType[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

Alignment

public static final FileType Alignment

Alignment file.

AnyOpenable

public static final FileType AnyOpenable

AnySaveable

public static final FileType AnySaveable

Constraints

public static final FileType Constraints

Constraints file.

CT

public static final FileType CT

CT (Connection Table) structure file.

CteDrawing

public static final FileType CteDrawing

Extended CT format. Similar to CT, but with additional columns for nucleobase position, bond type, and color/font styles

DotBracket

public static final FileType DotBracket

Dot-Bracket file.

DotPlot

public static final FileType DotPlot

Dot plot file.

Drawing

public static final FileType Drawing

DynalignSav

public static final FileType DynalignSav

Select a Dynalign save file.

Fasta

public static final FileType Fasta

FASTA Sequence file

FoldingSav

public static final FileType FoldingSav

Select a folding save file.

GIF

public static final FileType GIF

Helix

public static final FileType Helix

Helix format. (encodes bonds, but not sequence.)

Image

public static final FileType Image

JPEG

public static final FileType JPEG

NsdDrawing

public static final FileType NsdDrawing

Native structure drawing format. Similar to JSON. Encodes Bases, Bonds, and Styles separately.

OligoList

public static final FileType OligoList

Select an oligo list file.

OUT

public static final FileType OUT

Select a general OUT file.

PartitionSav

public static final FileType PartitionSav

Select a partition function save file.

PNG

public static final FileType PNG

Postscript

public static final FileType Postscript

Postscript (PS) file.

Report

public static final FileType Report

Oligo report file.

Seq

public static final FileType Seq

SEQ Sequence file

SeqGenbank

public static final FileType SeqGenbank

GenBank Flat File Format e.g.: https://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

SeqText

public static final FileType SeqText

Plain text Sequence file

Sequence

public static final FileType Sequence

SHAPE

public static final FileType SHAPE

SHAPE chemical modification file.

Structure

public static final FileType Structure

SVG

public static final FileType SVG

Scalable Vector Graphics (SVG) File

VectorImage

public static final FileType VectorImage

Field Detail

allTypes

public static final java.util.List<FileType> allTypes

description

private final java.lang.String description

extensions

private final java.lang.String extensions

extMap

public static final java.util.Map<java.lang.String,FileType> extMap

primaryTypes

public static final java.util.List<FileType> primaryTypes

subTypes

private final java.util.Set<FileType> subTypes

Method Detail

addExtensions

private void addExtensions(java.lang.StringBuilder sb)

addFilterString

public void addFilterString(java.lang.StringBuilder sb)

firstExtension

public java.lang.String firstExtension()

fromAny

public static FileType fromAny(java.lang.String typeName,
                               java.lang.String extension,
                               java.lang.String description,
                               java.lang.String filePath,
                               FileType defaultValue)

fromDesc

public static FileType fromDesc(java.lang.String description)

fromExt

public static FileType fromExt(java.lang.String ext)

fromFilter

public static FileType fromFilter(javax.swing.filechooser.FileFilter filter)

fromName

public static FileType fromName(java.lang.String typeName)

getDescription

public java.lang.String getDescription()

getExtensions

public java.lang.String[] getExtensions()

getFilterString

public java.lang.String getFilterString()

getFilterString

public java.lang.String getFilterString(boolean splitSubTypes)

includes

public boolean includes(FileType childType)

isSubTypeOf

public boolean isSubTypeOf(FileType... parentTypes)

subTypes

public java.util.Set<FileType> subTypes()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Enum<FileType>

valueOf

public static FileType valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

values

public static FileType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (FileType c : FileType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared