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RNAstructure
efn2
Results
(Calculate the folding free energy of structures in a CT file.)
Thermodynamic details for structure # 1 Exterior loop = -0.3 Stack = 0.3 for stack of 6-992 Stack = -1.3 for stack of 7-991 Stack = -0.9 for stack of 8-990 Stack = -2.2 for stack of 9-989 Helix total = -4.1 Internal/bulge = 3.0 for closure of 10-988 Size = 3 Stack = -0.6 for stack of 13-986 Stack = -1.0 for stack of 14-985 Stack = -1.3 for stack of 15-984 Stack = -2.1 for stack of 16-983 Helix total = -5.0 Multiloop = 5.8 for closure of 17-982 Stack = -3.3 for stack of 40-981 Stack = -2.5 for stack of 41-980 Stack = -1.5 for stack of 42-979 Stack = -2.1 for stack of 43-978 Helix total = -9.4 Internal/bulge = 5.1 for closure of 44-977 Size = 8 Stack = -0.9 for stack of 51-974 Helix total = -0.9 Internal/bulge = 1.9 for closure of 52-973 Size = 2 Stack = -0.9 for stack of 54-971 Stack = -2.4 for stack of 55-970 Stack = -2.1 for stack of 56-969 Stack = -1.3 for stack of 57-968 Stack = -0.6 for stack of 58-967 Helix total = -7.3 Internal/bulge = 1.9 for closure of 59-966 Size = 2 Stack = -0.5 for stack of 61-964 Stack = -1.4 for stack of 62-963 Helix total = -1.9 Internal/bulge = 1.6 for closure of 63-962 Size = 1 BP stack across bulge = -2.2 Stack = -1.3 for stack of 64-960 Helix total = -1.3 Internal/bulge = 1.6 for closure of 65-959 Size = 1 BP stack across bulge = -2.2 Stack = -2.1 for stack of 66-957 Stack = -2.4 for stack of 67-956 Stack = -2.1 for stack of 68-955 Helix total = -6.6 Multiloop = 6.2 for closure of 69-954 Stack = -0.6 for stack of 158-933 Helix total = -0.6 Internal/bulge = -0.7 for closure of 159-932 Size = 2 Stack = -2.4 for stack of 161-930 Helix total = -2.4 Internal/bulge = 1.7 for closure of 162-929 Size = 1 BP stack across bulge = -2.1 Stack = -2.1 for stack of 164-928 Stack = -3.3 for stack of 165-927 Stack = -2.4 for stack of 166-926 Stack = -2.1 for stack of 167-925 Stack = -2.4 for stack of 168-924 Helix total = -12.3 Multiloop = 7.0 for closure of 169-923 Stack = -2.1 for stack of 699-922 Stack = -2.2 for stack of 700-921 Stack = -1.3 for stack of 701-920 Stack = -1.0 for stack of 702-919 Stack = -1.1 for stack of 703-918 Stack = -0.9 for stack of 704-917 Stack = -1.3 for stack of 705-916 Stack = -0.9 for stack of 706-915 Helix total = -10.8 Multiloop = 8.1 for closure of 707-914 Stack = -2.4 for stack of 867-893 Stack = -1.4 for stack of 868-892 Stack = -1.4 for stack of 869-891 Stack = -1.3 for stack of 870-890 Helix total = -6.5 Hairpin = 6.9 for closure of 871-889 Stack = -2.5 for stack of 736-866 Stack = -2.1 for stack of 737-865 Stack = -2.1 for stack of 738-864 Helix total = -6.7 Internal/bulge = 3.0 for closure of 739-863 Size = 3 Stack = -0.9 for stack of 742-861 Stack = -0.9 for stack of 743-860 Stack = -2.1 for stack of 744-859 Stack = -3.4 for stack of 745-858 Helix total = -7.3 Internal/bulge = 3.7 for closure of 746-857 Size = 3 Stack = -2.1 for stack of 750-856 Stack = -2.2 for stack of 751-855 Stack = -1.3 for stack of 752-854 Stack = -2.1 for stack of 753-853 Stack = -2.4 for stack of 754-852 Stack = -1.1 for stack of 755-851 Helix total = -11.2 Multiloop = 3.7 for closure of 756-850 Stack = -2.1 for stack of 810-848 Helix total = -2.1 Internal/bulge = -0.6 for closure of 811-847 Size = 2 Stack = -3.3 for stack of 813-845 Stack = -3.3 for stack of 814-844 Stack = -2.1 for stack of 815-843 Stack = -1.3 for stack of 816-842 Helix total = -10.0 Hairpin = 7.2 for closure of 817-841 Stack = -2.5 for stack of 799-809 Stack = -0.5 for stack of 800-808 Helix total = -3.0 Hairpin = 4.8 for closure of 801-807 Stack = -1.1 for stack of 776-798 Stack = -1.0 for stack of 777-797 Helix total = -2.1 Internal/bulge = 1.9 for closure of 778-796 Size = 3 Stack = -2.2 for stack of 781-794 Stack = -1.3 for stack of 782-793 Stack = -2.2 for stack of 783-792 Stack = -3.3 for stack of 784-791 Helix total = -9.0 Hairpin = 4.1 for closure of 785-790 Stack = -2.1 for stack of 757-773 Stack = -2.2 for stack of 758-772 Helix total = -4.3 Hairpin = 4.2 for closure of 759-771 Stack = -2.5 for stack of 709-726 Stack = -2.1 for stack of 710-725 Stack = -1.3 for stack of 711-724 Stack = -2.1 for stack of 712-723 Stack = -2.4 for stack of 713-722 Helix total = -10.4 Hairpin = 5.1 for closure of 714-721 Stack = -3.4 for stack of 448-698 Helix total = -3.4 Internal/bulge = 2.2 for closure of 449-697 Size = 5 Stack = -2.2 for stack of 452-693 Stack = -2.1 for stack of 453-692 Stack = -0.6 for stack of 454-691 Stack = -1.3 for stack of 455-690 Helix total = -6.2 Internal/bulge = 2.3 for closure of 456-689 Size = 4 Stack = -2.1 for stack of 459-686 Stack = -3.4 for stack of 460-685 Helix total = -5.5 Internal/bulge = 2.6 for closure of 461-684 Size = 5 Stack = -2.4 for stack of 465-681 Stack = -2.2 for stack of 466-680 Helix total = -4.6 Internal/bulge = 1.3 for closure of 467-679 Size = 1 BP stack across bulge = -2.1 Stack = -2.1 for stack of 469-678 Helix total = -2.1 Internal/bulge = 0.5 for closure of 470-677 Size = 2 Stack = -2.1 for stack of 472-675 Stack = -0.9 for stack of 473-674 Stack = -2.1 for stack of 474-673 Stack = -2.4 for stack of 475-672 Stack = -1.1 for stack of 476-671 Helix total = -8.6 Internal/bulge = 1.9 for closure of 477-670 Size = 2 Stack = -0.9 for stack of 479-668 Stack = -0.9 for stack of 480-667 Helix total = -1.8 Internal/bulge = 1.2 for closure of 481-666 Size = 2 Stack = -2.1 for stack of 483-664 Helix total = -2.1 Multiloop = 9.1 for closure of 484-663 Stack = -2.1 for stack of 603-643 Stack = -0.9 for stack of 604-642 Helix total = -3.0 Internal/bulge = 1.9 for closure of 605-641 Size = 2 Stack = -0.9 for stack of 607-639 Stack = -2.2 for stack of 608-638 Stack = -1.4 for stack of 609-637 Stack = -2.1 for stack of 610-636 Helix total = -6.6 Hairpin = 6.1 for closure of 611-635 Stack = -1.0 for stack of 501-600 Stack = -2.5 for stack of 502-599 Stack = -2.1 for stack of 503-598 Stack = -0.6 for stack of 504-597 Stack = -2.5 for stack of 505-596 Helix total = -8.7 Internal/bulge = 3.3 for closure of 506-595 Size = 2 Stack = -2.1 for stack of 509-594 Stack = -3.4 for stack of 510-593 Stack = -2.1 for stack of 511-592 Helix total = -7.6 Internal/bulge = 1.2 for closure of 512-591 Size = 2 Stack = -3.3 for stack of 514-589 Stack = -2.2 for stack of 515-588 Helix total = -5.5 Multiloop = 4.4 for closure of 516-587 Stack = -1.3 for stack of 567-585 Stack = -2.2 for stack of 568-584 Helix total = -3.5 Internal/bulge = 1.7 for closure of 569-583 Size = 1 BP stack across bulge = -2.1 Stack = -2.4 for stack of 570-581 Helix total = -2.4 Hairpin = 4.0 for closure of 571-580 Stack = -1.5 for stack of 552-563 Stack = -2.1 for stack of 553-562 Helix total = -3.6 Hairpin = 4.3 for closure of 554-561 Stack = -1.0 for stack of 518-551 Stack = -0.9 for stack of 519-550 Stack = -0.6 for stack of 520-549 Stack = -1.4 for stack of 521-548 Helix total = -3.9 Internal/bulge = 1.9 for closure of 522-547 Size = 2 Stack = -2.2 for stack of 524-545 Stack = -2.1 for stack of 525-544 Helix total = -4.3 Internal/bulge = 3.6 for closure of 526-543 Size = 6 Stack = -2.4 for stack of 529-538 Stack = -2.1 for stack of 530-537 Helix total = -4.5 Hairpin = 4.1 for closure of 531-536 Stack = -1.0 for stack of 170-442 Stack = -1.3 for stack of 171-441 Stack = -1.1 for stack of 172-440 Stack = -2.1 for stack of 173-439 Stack = -3.3 for stack of 174-438 Stack = -2.4 for stack of 175-437 Stack = -1.1 for stack of 176-436 Helix total = -12.3 Internal/bulge = 1.2 for closure of 177-435 Size = 2 Stack = -2.2 for stack of 179-433 Stack = -2.1 for stack of 180-432 Stack = -3.4 for stack of 181-431 Helix total = -7.7 Internal/bulge = 2.0 for closure of 182-430 Size = 14 Stack = -0.9 for stack of 190-422 Stack = -1.3 for stack of 191-421 Stack = -2.2 for stack of 192-420 Helix total = -4.4 Internal/bulge = 1.1 for closure of 193-419 Size = 2 Stack = -1.3 for stack of 195-417 Helix total = -1.3 Internal/bulge = 2.6 for closure of 196-416 Size = 12 Stack = -2.2 for stack of 202-408 Stack = -0.9 for stack of 203-407 Helix total = -3.1 Multiloop = 5.4 for closure of 204-406 Stack = -3.3 for stack of 375-405 Stack = -2.2 for stack of 376-404 Stack = -1.3 for stack of 377-403 Helix total = -6.8 Internal/bulge = 1.7 for closure of 378-402 Size = 6 Stack = -2.5 for stack of 382-398 Stack = -0.6 for stack of 383-397 Stack = -2.1 for stack of 384-396 Helix total = -5.2 Hairpin = 5.4 for closure of 385-395 Stack = -0.9 for stack of 242-374 Stack = -2.1 for stack of 243-373 Stack = -2.4 for stack of 244-372 Stack = -1.1 for stack of 245-371 Stack = -2.1 for stack of 246-370 Stack = -2.2 for stack of 247-369 Helix total = -10.8 Internal/bulge = 6.1 for closure of 248-368 Size = 9 Stack = -3.4 for stack of 250-359 Helix total = -3.4 Internal/bulge = 2.4 for closure of 251-358 Size = 10 Stack = -1.3 for stack of 257-352 Helix total = -1.3 Internal/bulge = 1.1 for closure of 258-351 Size = 5 Stack = -1.5 for stack of 262-348 Helix total = -1.5 Internal/bulge = 2.0 for closure of 263-347 Size = 1 BP stack across bulge = -1.4 Stack = -2.1 for stack of 264-345 Stack = -3.4 for stack of 265-344 Helix total = -5.5 Internal/bulge = 1.5 for closure of 266-343 Size = 8 Stack = -3.3 for stack of 271-338 Stack = -3.3 for stack of 272-337 Stack = -2.1 for stack of 273-336 Helix total = -8.7 Internal/bulge = 6.1 for closure of 274-335 Size = 12 Stack = -2.1 for stack of 287-334 Stack = -3.3 for stack of 288-333 Stack = -2.4 for stack of 289-332 Helix total = -7.8 Internal/bulge = 5.6 for closure of 290-331 Size = 9 Stack = -0.6 for stack of 297-327 Stack = -1.3 for stack of 298-326 Stack = -1.1 for stack of 299-325 Helix total = -3.0 Internal/bulge = 1.8 for closure of 300-324 Size = 6 Stack = -0.9 for stack of 304-320 Stack = -1.3 for stack of 305-319 Stack = -0.6 for stack of 306-318 Stack = -2.5 for stack of 307-317 Helix total = -5.3 Hairpin = 3.9 for closure of 308-316 Stack = -2.1 for stack of 209-241 Stack = -1.1 for stack of 210-240 Stack = -2.4 for stack of 211-239 Stack = -2.1 for stack of 212-238 Helix total = -7.7 Hairpin = 5.9 for closure of 213-237 Stack = -3.3 for stack of 117-155 Stack = -2.1 for stack of 118-154 Stack = -0.9 for stack of 119-153 Stack = -2.4 for stack of 120-152 Stack = -2.1 for stack of 121-151 Stack = 0.3 for stack of 122-150 Stack = -0.5 for stack of 123-149 Stack = -1.3 for stack of 124-148 Helix total = -12.3 Internal/bulge = 1.5 for closure of 125-147 Size = 1 BP stack across bulge = -1.4 Stack = -1.0 for stack of 126-145 Stack = -1.4 for stack of 127-144 Stack = -0.5 for stack of 128-143 Stack = -1.5 for stack of 129-142 Stack = -2.1 for stack of 130-141 Stack = -0.9 for stack of 131-140 Stack = -2.2 for stack of 132-139 Helix total = -9.6 Hairpin = 4.8 for closure of 133-138 Stack = -2.1 for stack of 71-105 Stack = -3.3 for stack of 72-104 Stack = -3.4 for stack of 73-103 Stack = -2.1 for stack of 74-102 Helix total = -10.9 Internal/bulge = 3.7 for closure of 75-101 Size = 3 Stack = -3.3 for stack of 79-100 Helix total = -3.3 Internal/bulge = 2.3 for closure of 80-99 Size = 8 Stack = -2.2 for stack of 85-94 Stack = -2.4 for stack of 86-93 Helix total = -4.6 Hairpin = 3.7 for closure of 87-92 Stack = -2.1 for stack of 18-36 Stack = -2.5 for stack of 19-35 Stack = -1.0 for stack of 20-34 Stack = -2.2 for stack of 21-33 Stack = -2.1 for stack of 22-32 Stack = -0.6 for stack of 23-31 Stack = -2.1 for stack of 24-30 Helix total = -12.6 Hairpin = 5.4 for closure of 25-29 Total energy = -150.5
Download this file:
efn2.txt
Command Line:
efn2
test.ct
efn2.txt
--temperature 310.15 --writedetails