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RNAstructure
efn2
Results
(Calculate the folding free energy of structures in a CT file.)
Thermodynamic details for structure # 1 Exterior loop = -0.1 Stack = -2.4 for stack of 371-1002 Stack = -2.1 for stack of 372-1001 Stack = -0.9 for stack of 373-1000 Stack = -2.1 for stack of 374-999 Stack = -1.5 for stack of 375-998 Stack = -1.4 for stack of 376-997 Helix total = -10.4 Multiloop = 0.4 for closure of 377-996 Stack = -1.0 for stack of 945-994 Stack = -2.2 for stack of 946-993 Stack = -2.1 for stack of 947-992 Stack = -0.6 for stack of 948-991 Stack = -1.3 for stack of 949-990 Helix total = -7.2 Internal/bulge = 3.6 for closure of 950-989 Size = 6 Stack = -0.9 for stack of 953-984 Stack = -2.1 for stack of 954-983 Helix total = -3.0 Internal/bulge = 0.3 for closure of 955-982 Size = 2 Stack = -3.4 for stack of 957-980 Stack = -2.1 for stack of 958-979 Stack = -1.0 for stack of 959-978 Stack = -1.1 for stack of 960-977 Helix total = -7.6 Hairpin = 6.9 for closure of 961-976 Stack = -2.1 for stack of 434-943 Stack = -1.1 for stack of 435-942 Stack = -2.4 for stack of 436-941 Stack = -3.3 for stack of 437-940 Stack = -2.1 for stack of 438-939 Stack = -1.1 for stack of 439-938 Helix total = -12.1 Multiloop = 2.1 for closure of 440-937 Stack = -2.1 for stack of 921-936 Stack = -0.9 for stack of 922-935 Stack = -2.4 for stack of 923-934 Stack = -2.1 for stack of 924-933 Stack = -2.4 for stack of 925-932 Helix total = -9.9 Hairpin = 4.6 for closure of 926-931 Stack = -3.3 for stack of 904-912 Helix total = -3.3 Hairpin = 4.6 for closure of 905-911 Stack = -0.9 for stack of 463-902 Stack = -2.1 for stack of 464-901 Stack = -2.4 for stack of 465-900 Stack = -2.2 for stack of 466-899 Stack = -2.1 for stack of 467-898 Helix total = -9.7 Internal/bulge = 5.6 for closure of 468-897 Size = 7 Stack = -2.1 for stack of 469-889 Stack = -3.3 for stack of 470-888 Helix total = -5.4 Internal/bulge = 0.8 for closure of 471-887 Size = 4 Stack = -2.1 for stack of 474-884 Stack = -2.4 for stack of 475-883 Stack = -1.1 for stack of 476-882 Stack = -2.4 for stack of 477-881 Helix total = -8.0 Internal/bulge = 6.6 for closure of 478-880 Size = 14 Stack = -0.9 for stack of 481-867 Stack = -2.2 for stack of 482-866 Stack = -2.1 for stack of 483-865 Stack = -2.1 for stack of 484-864 Stack = -3.3 for stack of 485-863 Helix total = -10.6 Multiloop = 2.7 for closure of 486-862 Stack = -0.9 for stack of 590-860 Stack = -2.1 for stack of 591-859 Stack = -3.4 for stack of 592-858 Stack = -2.1 for stack of 593-857 Stack = -2.1 for stack of 594-856 Stack = -2.2 for stack of 595-855 Helix total = -12.8 Internal/bulge = 3.8 for closure of 596-854 Size = 6 Stack = -1.3 for stack of 599-849 Stack = -2.1 for stack of 600-848 Stack = -2.4 for stack of 601-847 Stack = -2.2 for stack of 602-846 Stack = -2.1 for stack of 603-845 Stack = -0.5 for stack of 604-844 Helix total = -10.6 Multiloop = 5.7 for closure of 605-843 Stack = -0.6 for stack of 800-841 Stack = -0.9 for stack of 801-840 Stack = -2.4 for stack of 802-839 Stack = -2.1 for stack of 803-838 Stack = -0.9 for stack of 804-837 Stack = -1.1 for stack of 805-836 Stack = -1.0 for stack of 806-835 Helix total = -9.0 Internal/bulge = 5.3 for closure of 807-834 Size = 10 Stack = -1.4 for stack of 811-826 Stack = -2.4 for stack of 812-825 Stack = -3.3 for stack of 813-824 Helix total = -7.1 Hairpin = 4.7 for closure of 814-823 Stack = -2.2 for stack of 781-794 Stack = -1.3 for stack of 782-793 Stack = -2.2 for stack of 783-792 Stack = -3.3 for stack of 784-791 Helix total = -9.0 Hairpin = 4.1 for closure of 785-790 Stack = -2.4 for stack of 616-780 Stack = -3.3 for stack of 617-779 Stack = -2.1 for stack of 618-778 Stack = -1.1 for stack of 619-777 Helix total = -8.9 Internal/bulge = 4.2 for closure of 620-776 Size = 3 Stack = -2.5 for stack of 621-772 Stack = -3.3 for stack of 622-771 Stack = -2.1 for stack of 623-770 Stack = -2.1 for stack of 624-769 Stack = -2.2 for stack of 625-768 Helix total = -12.2 Internal/bulge = 5.0 for closure of 626-767 Size = 5 Stack = -2.2 for stack of 627-761 Stack = -2.4 for stack of 628-760 Stack = -2.2 for stack of 629-759 Stack = -2.1 for stack of 630-758 Stack = -2.4 for stack of 631-757 Helix total = -11.3 Internal/bulge = 5.7 for closure of 632-756 Size = 8 Stack = -2.1 for stack of 633-747 Stack = -3.4 for stack of 634-746 Stack = -2.1 for stack of 635-745 Helix total = -7.6 Internal/bulge = 2.4 for closure of 636-744 Size = 16 Stack = -2.1 for stack of 645-735 Stack = -2.4 for stack of 646-734 Stack = -2.2 for stack of 647-733 Stack = -2.1 for stack of 648-732 Helix total = -8.8 Internal/bulge = 3.8 for closure of 649-731 Size = 2 Stack = -2.1 for stack of 652-730 Stack = -3.3 for stack of 653-729 Stack = -3.4 for stack of 654-728 Helix total = -8.8 Multiloop = 6.1 for closure of 655-727 Stack = -2.5 for stack of 709-726 Stack = -2.1 for stack of 710-725 Stack = -1.3 for stack of 711-724 Stack = -2.1 for stack of 712-723 Stack = -2.4 for stack of 713-722 Helix total = -10.4 Hairpin = 5.1 for closure of 714-721 Stack = -1.3 for stack of 675-702 Stack = -2.2 for stack of 676-701 Stack = -2.1 for stack of 677-700 Stack = -2.1 for stack of 678-699 Stack = -2.5 for stack of 679-698 Helix total = -10.2 Internal/bulge = 3.0 for closure of 680-697 Size = 4 Stack = -3.4 for stack of 684-695 Stack = -2.1 for stack of 685-694 Helix total = -5.5 Hairpin = 5.1 for closure of 686-693 Stack = -2.1 for stack of 663-673 Stack = -2.4 for stack of 664-672 Stack = -1.1 for stack of 665-671 Helix total = -5.6 Hairpin = 5.9 for closure of 666-670 Stack = -2.1 for stack of 546-583 Stack = -1.1 for stack of 547-582 Stack = -1.3 for stack of 548-581 Stack = -0.6 for stack of 549-580 Stack = -2.1 for stack of 550-579 Stack = -3.3 for stack of 551-578 Stack = -1.5 for stack of 552-577 Helix total = -12.0 Hairpin = 4.1 for closure of 553-576 Stack = -2.2 for stack of 524-543 Stack = -2.1 for stack of 525-542 Stack = -0.6 for stack of 526-541 Stack = -1.4 for stack of 527-540 Stack = -0.9 for stack of 528-539 Stack = -2.4 for stack of 529-538 Stack = -2.1 for stack of 530-537 Helix total = -11.7 Hairpin = 4.1 for closure of 531-536 Stack = -0.9 for stack of 500-520 Stack = -1.0 for stack of 501-519 Stack = -2.5 for stack of 502-518 Stack = -2.1 for stack of 503-517 Helix total = -6.5 Internal/bulge = 1.6 for closure of 504-516 Size = 1 BP stack across bulge = -2.2 Stack = -3.3 for stack of 506-515 Helix total = -3.3 Hairpin = 3.9 for closure of 507-514 Stack = -3.4 for stack of 487-494 Helix total = -3.4 Hairpin = 4.1 for closure of 488-493 Stack = -3.4 for stack of 448-461 Stack = -2.1 for stack of 449-460 Helix total = -5.5 Hairpin = 5.0 for closure of 450-459 Stack = -3.4 for stack of 409-431 Stack = -2.1 for stack of 410-430 Stack = -1.1 for stack of 411-429 Stack = -1.3 for stack of 412-428 Stack = -1.1 for stack of 413-427 Helix total = -9.0 Internal/bulge = 2.9 for closure of 414-426 Size = 1 BP stack across bulge = -0.9 Stack = -0.9 for stack of 416-425 Stack = -1.3 for stack of 417-424 Helix total = -2.2 Hairpin = 4.7 for closure of 418-423 Stack = -2.2 for stack of 379-404 Stack = -1.3 for stack of 380-403 Helix total = -3.5 Internal/bulge = 1.7 for closure of 381-402 Size = 6 Stack = -2.5 for stack of 385-398 Stack = -0.6 for stack of 386-397 Stack = -2.1 for stack of 387-396 Stack = -3.3 for stack of 388-395 Helix total = -8.5 Hairpin = 4.1 for closure of 389-394 Stack = -2.1 for stack of 2-361 Stack = -3.3 for stack of 3-360 Stack = -3.4 for stack of 4-359 Stack = -2.1 for stack of 5-358 Helix total = -10.9 Internal/bulge = 2.9 for closure of 6-357 Size = 10 Stack = -1.1 for stack of 12-351 Stack = -1.3 for stack of 13-350 Stack = -1.4 for stack of 14-349 Stack = -2.4 for stack of 15-348 Helix total = -6.2 Multiloop = 1.4 for closure of 16-347 Stack = -2.1 for stack of 213-345 Stack = -2.5 for stack of 214-344 Helix total = -4.6 Internal/bulge = 3.3 for closure of 215-343 Size = 14 Stack = -1.1 for stack of 223-335 Stack = -2.1 for stack of 224-334 Stack = -3.3 for stack of 225-333 Stack = -2.4 for stack of 226-332 Helix total = -8.9 Internal/bulge = 4.6 for closure of 227-331 Size = 4 Stack = -0.9 for stack of 232-330 Stack = -0.9 for stack of 233-329 Stack = -1.3 for stack of 234-328 Stack = -0.9 for stack of 235-327 Stack = -0.9 for stack of 236-326 Helix total = -4.9 Internal/bulge = 1.9 for closure of 237-325 Size = 2 Stack = -1.1 for stack of 239-323 Helix total = -1.1 Internal/bulge = -0.7 for closure of 240-322 Size = 2 Stack = -0.9 for stack of 242-320 Stack = -1.0 for stack of 243-319 Stack = -1.3 for stack of 244-318 Stack = -1.4 for stack of 245-317 Stack = 0.3 for stack of 246-316 Stack = -1.4 for stack of 247-315 Helix total = -5.7 Internal/bulge = 2.1 for closure of 248-314 Size = 1 BP stack across bulge = -1.3 Stack = -2.1 for stack of 249-312 Stack = -3.4 for stack of 250-311 Stack = -2.1 for stack of 251-310 Helix total = -7.6 Internal/bulge = 3.3 for closure of 252-309 Size = 2 Stack = -2.5 for stack of 255-308 Stack = -0.6 for stack of 256-307 Stack = -1.3 for stack of 257-306 Stack = -0.6 for stack of 258-305 Stack = -1.4 for stack of 259-304 Stack = -1.3 for stack of 260-303 Stack = -0.6 for stack of 261-302 Stack = -0.5 for stack of 262-301 Stack = -1.4 for stack of 263-300 Helix total = -10.2 Internal/bulge = 6.2 for closure of 264-299 Size = 10 Stack = -3.3 for stack of 266-289 Stack = -2.1 for stack of 267-288 Stack = -1.1 for stack of 268-287 Helix total = -6.5 Internal/bulge = 1.2 for closure of 269-286 Size = 2 Stack = -3.3 for stack of 271-284 Helix total = -3.3 Hairpin = 5.5 for closure of 272-283 Stack = -2.4 for stack of 171-212 Stack = -1.1 for stack of 172-211 Stack = -2.1 for stack of 173-210 Stack = -3.3 for stack of 174-209 Stack = -2.4 for stack of 175-208 Helix total = -11.3 Internal/bulge = 1.6 for closure of 176-207 Size = 10 Stack = -2.1 for stack of 182-201 Stack = -2.4 for stack of 183-200 Stack = -2.1 for stack of 184-199 Stack = -1.3 for stack of 185-198 Helix total = -7.9 Internal/bulge = 1.2 for closure of 186-197 Size = 2 Stack = -2.1 for stack of 188-195 Helix total = -2.1 Hairpin = 5.3 for closure of 189-194 Stack = -1.1 for stack of 106-170 Stack = -2.4 for stack of 107-169 Helix total = -3.5 Internal/bulge = 1.7 for closure of 108-168 Size = 1 BP stack across bulge = -2.1 Stack = -2.4 for stack of 110-167 Stack = -3.3 for stack of 111-166 Helix total = -5.7 Internal/bulge = 0.8 for closure of 112-165 Size = 2 Stack = -2.1 for stack of 114-163 Helix total = -2.1 Internal/bulge = 4.5 for closure of 115-162 Size = 5 Stack = -2.4 for stack of 116-156 Stack = -3.3 for stack of 117-155 Stack = -2.1 for stack of 118-154 Stack = -0.9 for stack of 119-153 Stack = -2.4 for stack of 120-152 Stack = -2.1 for stack of 121-151 Stack = 0.3 for stack of 122-150 Stack = -0.5 for stack of 123-149 Stack = -1.3 for stack of 124-148 Helix total = -14.7 Internal/bulge = 1.5 for closure of 125-147 Size = 1 BP stack across bulge = -1.4 Stack = -1.0 for stack of 126-145 Stack = -1.4 for stack of 127-144 Stack = -0.5 for stack of 128-143 Stack = -1.5 for stack of 129-142 Stack = -2.1 for stack of 130-141 Stack = -0.9 for stack of 131-140 Stack = -2.2 for stack of 132-139 Helix total = -9.6 Hairpin = 4.8 for closure of 133-138 Stack = -3.4 for stack of 37-103 Stack = -2.1 for stack of 38-102 Stack = -2.1 for stack of 39-101 Stack = -3.3 for stack of 40-100 Stack = -2.2 for stack of 41-99 Helix total = -13.1 Multiloop = 5.5 for closure of 42-98 Stack = -3.3 for stack of 72-95 Helix total = -3.3 Internal/bulge = 0.4 for closure of 73-94 Size = 1 BP stack across bulge = -3.4 Stack = -2.1 for stack of 74-92 Stack = -1.0 for stack of 75-91 Stack = -0.9 for stack of 76-90 Stack = -0.9 for stack of 77-89 Stack = -2.1 for stack of 78-88 Stack = -1.5 for stack of 79-87 Helix total = -8.5 Hairpin = 5.4 for closure of 80-86 Stack = -2.1 for stack of 43-70 Stack = -2.1 for stack of 44-69 Stack = -2.4 for stack of 45-68 Helix total = -6.6 Internal/bulge = 1.9 for closure of 46-67 Size = 2 Stack = -1.0 for stack of 48-65 Stack = -2.5 for stack of 49-64 Helix total = -3.5 Hairpin = 4.6 for closure of 50-63 Stack = -2.1 for stack of 18-36 Stack = -2.5 for stack of 19-35 Stack = -1.0 for stack of 20-34 Stack = -2.2 for stack of 21-33 Stack = -2.1 for stack of 22-32 Stack = -0.6 for stack of 23-31 Stack = -2.1 for stack of 24-30 Helix total = -12.6 Hairpin = 5.4 for closure of 25-29 Total energy = -244.5
Download this file:
efn2.txt
Command Line:
efn2
2_5.ct
efn2.txt
--temperature 310.15 --writedetails