Using the scorer Server

It is possible to download example CT files, to demonstrate the interface, by clicking on the links above the "Select CT Input" form section.

  1. Select a predicted CT structure for analysis.

    A CT file can be uploaded using the "Select Predicted CT File" control. The length of the sequence that creates the predicted structure(s) must be equal to the length of the sequence contained in the accepted structure. This CT file can have any number of structures in it.
  2. Select an accepted CT structure for analysis.

    A CT file can be uploaded using the "Select Accepted CT File" control. This CT file must have only one structure in it.
  3. Add optional data, if desired.

    The scorer server allows enforcement of exact pairing to be used by checking the "Enforce Exact Pairing" box.
  4. Enter an email address where results can be sent, if desired.

    If an email address is specified in the appropriate box, an email will be sent to inform you when calculations are done. Note that failing to enter an email address may cause results to be inaccessible, if you navigate away from the server while calculations are running.
  5. Begin the calculation.

    Press the "Submit Query" button to begin the calculation. If you remain on the server page, the results will appear when they are finished.

For detailed explanations of the scorer algorithm and its parameters, please click here.