RNAstructure Classes  Version 6.1
ProbScan.h File Reference
#include "RNA.h"
#include "../src/defines.h"
#include <vector>

Classes

class  ProbScan
 

Typedefs

typedef struct hp hairpin_t
 A ProbScan hairpin closed by i and j. More...
 
typedef struct il internal_loop_t
 A ProbScan internal loop closed by i and j on the exterior and k and l in the interior, where i<k<l<j. More...
 
typedef struct bp basestack_t
 A ProbScan base pair stack. More...
 
typedef struct mb multibranch_loop_t
 A ProbScan multibranch loop. More...
 

Functions

hairpin_t hairpin (double p, int i, int j)
 
internal_loop_t internal_loop (double p, int i, int j, int k, int l)
 
basestack_t basestack (double p, int i, int j, int k, int l)
 
multibranch_loop_t multibranch_loop (int i, int j)
 
void add_branch (multibranch_loop_t &mb, int k, int l)
 
void show_hairpins (vector< hairpin_t >)
 
void show_stacks (vector< basestack_t >)
 
void show_internal_loops (vector< internal_loop_t >)
 
void show_bulge_loops (vector< internal_loop_t >)
 
void show_mbl (multibranch_loop_t mbl)
 
void show_mb_element_array (vector< mb_element >)
 

Typedef Documentation

typedef struct bp basestack_t

A ProbScan base pair stack.

typedef struct hp hairpin_t

A ProbScan hairpin closed by i and j.

typedef struct il internal_loop_t

A ProbScan internal loop closed by i and j on the exterior and k and l in the interior, where i<k<l<j.

typedef struct mb multibranch_loop_t

A ProbScan multibranch loop.

A multibranch loop, represented by a vector pairs. branches[0] must close the multibranch loop

Function Documentation

void add_branch ( multibranch_loop_t mb,
int  k,
int  l 
)
basestack_t basestack ( double  p,
int  i,
int  j,
int  k,
int  l 
)
hairpin_t hairpin ( double  p,
int  i,
int  j 
)
internal_loop_t internal_loop ( double  p,
int  i,
int  j,
int  k,
int  l 
)
multibranch_loop_t multibranch_loop ( int  i,
int  j 
)
void show_bulge_loops ( vector< internal_loop_t )
void show_hairpins ( vector< hairpin_t )
void show_internal_loops ( vector< internal_loop_t )
void show_mb_element_array ( vector< mb_element >  )
void show_mbl ( multibranch_loop_t  mbl)
void show_stacks ( vector< basestack_t )