RNAstructure logo

RNAstructure Command Line Help

dot2ct is used to generate a CT file from a dot bracket file. The dot bracket structure can be regenerated from the CT structure by using the ct2dot interface.

USAGE: dot2ct <bracket file> <ct file>

Required parameters:

<bracket file> The name of a dot bracket file containing the structure to convert.
<ct file> The name of a CT file to which output will be written.

Options that do not require added values:

-h, -H, --help Display the usage details message.

Options that require added values:



  1. Reuter, J.S. and Mathews, D.H.
    "RNAstructure: software for RNA secondary structure prediction and analysis."
    BMC Bioinformatics, 11:129. (2010).