Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    222:288 223:287 224:286 225:285 226:284
	Energy of Broken Structure: -56.2
	Energy of Pseudo-Helices:   -5.7
	Pseudoknot Energy Penalty:  8.1
	Total Free Energy:          -53.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -2.2
		Stack = -0.9  for stack of 315-334
		Stack = -1.0  for stack of 316-333
		Stack = -1.3  for stack of 317-332
		Stack = -0.9  for stack of 318-331
		Stack = -0.9  for stack of 319-330
		Stack = -2.2  for stack of 320-329
	Helix total = -7.2
	Hairpin = 3.3  for closure of 321-328
		Stack = -1.0  for stack of 292-311
		Stack = -1.3  for stack of 293-310
		Stack = -0.6  for stack of 294-309
		Stack = -1.3  for stack of 295-308
		Stack = -1.1  for stack of 296-307
		Stack = -2.4  for stack of 297-306
		Stack = -2.1  for stack of 298-305
	Helix total = -9.8
	Hairpin = 4.4  for closure of 299-304
		Stack = -2.2  for stack of 237-275
		Stack = -0.9  for stack of 238-274
		Stack = -1.3  for stack of 239-273
		Stack = -1.1  for stack of 240-272
		Stack = -2.4  for stack of 241-271
	Helix total = -7.9
	Internal/bulge = 3.0  for closure of 242-270	Size = 5
		Stack = -1.4  for stack of 246-267
		Stack = -1.3  for stack of 247-266
		Stack = -0.9  for stack of 248-265
		Stack = -1.1  for stack of 249-264
		Stack = -1.3  for stack of 250-263
		Stack = -1.1  for stack of 251-262
		Stack = -1.3  for stack of 252-261
		Stack = -1.1  for stack of 253-260
	Helix total = -9.5
	Hairpin = 5.3  for closure of 254-259
		Stack = -1.0  for stack of 119-236
		Stack = -2.1  for stack of 120-235
		Stack = -2.4  for stack of 121-234
		Stack = -2.1  for stack of 122-233
		Stack = -3.3  for stack of 123-232
		Stack = -3.4  for stack of 124-231
	Helix total = -14.3
	Multiloop = 7.9  for closure of 125-230
		Stack = -2.1  for stack of 189-209
		Stack = -1.1  for stack of 190-208
		Stack = -1.3  for stack of 191-207
		Stack = -1.1  for stack of 192-206
		Stack = -0.9  for stack of 193-205
	Helix total = -6.5
	Hairpin = 6.4  for closure of 194-204
		Stack = -2.4  for stack of 130-181
		Stack = -2.4  for stack of 131-180
		Stack = -2.4  for stack of 132-179
	Helix total = -7.2
	Internal/bulge = 1.7  for closure of 133-178	Size = 1 BP stack across bulge = -2.1
		Stack = -3.3  for stack of 134-176
	Helix total = -3.3
	Internal/bulge = 3.0  for closure of 135-175	Size = 9
		Stack = -2.1  for stack of 141-170
		Stack = -1.1  for stack of 142-169
		Stack = -1.3  for stack of 143-168
		Stack = -1.1  for stack of 144-167
		Stack = -1.3  for stack of 145-166
		Stack = -0.9  for stack of 146-165
		Stack = -1.1  for stack of 147-164
		Stack = -0.9  for stack of 148-163
		Stack = -1.3  for stack of 149-162
	Helix total = -11.1
	Hairpin = 5.3  for closure of 150-161
		Stack = -1.3  for stack of 69-114
		Stack = -1.1  for stack of 70-113
		Stack = -2.4  for stack of 71-112
		Stack = -2.1  for stack of 72-111
		Stack = -0.9  for stack of 73-110
		Stack = -0.9  for stack of 74-109
		Stack = -0.9  for stack of 75-108
		Stack = -0.9  for stack of 76-107
		Stack = -0.9  for stack of 77-106
	Helix total = -11.4
	Internal/bulge = 2.7  for closure of 78-105	Size = 1 BP stack across bulge = -1.1
		Stack = -1.3  for stack of 79-103
		Stack = -0.9  for stack of 80-102
		Stack = -0.9  for stack of 81-101
		Stack = -1.1  for stack of 82-100
		Stack = -1.3  for stack of 83-99
		Stack = -0.9  for stack of 84-98
		Stack = -1.1  for stack of 85-97
		Stack = -1.3  for stack of 86-96
		Stack = -0.9  for stack of 87-95
	Helix total = -9.7
	Hairpin = 4.5  for closure of 88-94
		Stack = -2.1  for stack of 6-63
		Stack = -2.4  for stack of 7-62
		Stack = -1.1  for stack of 8-61
		Stack = -1.3  for stack of 9-60
		Stack = -1.0  for stack of 10-59
		Stack = -0.9  for stack of 11-58
		Stack = -1.4  for stack of 12-57
	Helix total = -10.2
	Internal/bulge = 7.4  for closure of 13-56	Size = 30
		Stack = -3.3  for stack of 19-30
		Stack = -2.1  for stack of 20-29
		Stack = -0.9  for stack of 21-28
	Helix total = -6.3
	Hairpin = 5.5  for closure of 22-27


	Total energy = -56.2



