Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:67 49:66 50:65 51:64 52:63 147:181 148:180 149:179
	    150:178 151:177 152:176 197:229 198:228 199:227 200:226 201:225
	    202:224 245:283 246:282 247:281 248:280 249:278 250:277 251:276
	Energy of Broken Structure: -47.4
	Energy of Pseudo-Helices:   -39.7
	Pseudoknot Energy Penalty:  41.8
	Total Free Energy:          -45.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-343
		Stack = -1.5  for stack of 2-342
		Stack = -2.1  for stack of 3-341
		Stack = -3.3  for stack of 4-340
		Stack = -3.4  for stack of 5-339
		Stack = -2.4  for stack of 6-338
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-337
		Stack = -3.4  for stack of 320-336
		Stack = -2.4  for stack of 321-335
		Stack = -3.3  for stack of 322-334
		Stack = -3.3  for stack of 323-333
	Helix total = -12.4
	Hairpin = 4.4  for closure of 324-332
		Stack = -2.4  for stack of 20-316
		Stack = -2.5  for stack of 21-315
		Stack = -0.6  for stack of 22-314
	Helix total = -5.5
	Internal/bulge = 1.7  for closure of 23-313	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 26-310	Size = 2
		Stack = -2.1  for stack of 28-308
	Helix total = -2.1
	Internal/bulge = 3.0  for closure of 29-307	Size = 4
	Helix total = 0.0
	Internal/bulge = 0.3  for closure of 33-305	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 36-302	Size = 3
		Stack = -0.9  for stack of 38-299
	Helix total = -0.9
	Internal/bulge = 3.9  for closure of 39-298	Size = 9
		Stack = -2.1  for stack of 43-291
		Stack = -1.1  for stack of 44-290
		Stack = -2.1  for stack of 45-289
		Stack = -3.4  for stack of 46-288
	Helix total = -8.7
	Multiloop = 6.3  for closure of 47-287
		Stack = -2.5  for stack of 232-264
		Stack = -2.1  for stack of 233-263
		Stack = -0.9  for stack of 234-262
		Stack = -0.9  for stack of 235-261
	Helix total = -6.4
	Internal/bulge = 3.2  for closure of 236-260	Size = 10
		Stack = -3.3  for stack of 242-254
		Stack = -2.1  for stack of 243-253
	Helix total = -5.4
	Hairpin = 5.7  for closure of 244-252
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 182-216	Size = 2
		Stack = -2.5  for stack of 184-214
		Stack = -3.3  for stack of 185-213
		Stack = -2.1  for stack of 186-212
		Stack = -0.9  for stack of 187-211
		Stack = -0.6  for stack of 188-210
		Stack = -2.5  for stack of 189-209
		Stack = -2.1  for stack of 190-208
		Stack = -1.3  for stack of 191-207
		Stack = -1.1  for stack of 192-206
		Stack = -1.3  for stack of 193-205
		Stack = -1.1  for stack of 194-204
	Helix total = -18.8
	Hairpin = 5.8  for closure of 195-203
		Stack = -3.3  for stack of 133-167
		Stack = -2.4  for stack of 134-166
		Stack = -2.4  for stack of 135-165
		Stack = -1.1  for stack of 136-164
		Stack = -2.1  for stack of 137-163
	Helix total = -11.3
	Internal/bulge = 3.7  for closure of 138-162	Size = 3
		Stack = -1.0  for stack of 139-158
		Stack = -0.9  for stack of 140-157
		Stack = -0.6  for stack of 141-156
	Helix total = -2.5
	Hairpin = 6.4  for closure of 142-155
		Stack = -0.9  for stack of 115-132
		Stack = -1.3  for stack of 116-131
		Stack = -2.1  for stack of 117-130
		Stack = -3.4  for stack of 118-129
		Stack = -2.1  for stack of 119-128
	Helix total = -9.8
	Hairpin = 4.2  for closure of 120-127
		Stack = -2.1  for stack of 54-81
		Stack = -2.2  for stack of 55-80
		Stack = -1.3  for stack of 56-79
		Stack = -2.1  for stack of 57-78
		Stack = -2.2  for stack of 58-77
		Stack = -1.3  for stack of 59-76
	Helix total = -11.2
	Hairpin = 6.6  for closure of 60-75


	Total energy = -47.4



