Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:67 50:66 51:65 52:64 53:63 150:209 151:208 152:207
	    153:206 154:205 155:204 156:203 223:256 224:255 225:254 226:253
	    227:252 228:251 229:250 230:249 274:314 275:313 276:312 278:309
	    279:308 280:307
	Energy of Broken Structure: -73.6
	Energy of Pseudo-Helices:   -46.6
	Pseudoknot Energy Penalty:  36.8
	Total Free Energy:          -83.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-374
		Stack = -1.5  for stack of 2-373
		Stack = -2.1  for stack of 3-372
		Stack = -3.4  for stack of 4-371
		Stack = -2.1  for stack of 5-370
		Stack = -2.1  for stack of 6-369
	Helix total = -14.5
	Multiloop = 5.1  for closure of 7-368
		Stack = -3.4  for stack of 351-367
		Stack = -2.4  for stack of 352-366
		Stack = -3.3  for stack of 353-365
		Stack = -3.3  for stack of 354-364
	Helix total = -12.4
	Hairpin = 4.4  for closure of 355-363
		Stack = -2.4  for stack of 20-347
		Stack = -2.5  for stack of 21-346
		Stack = 0.3  for stack of 22-345
		Stack = -0.5  for stack of 23-344
		Stack = -2.1  for stack of 24-343
		Stack = -2.5  for stack of 25-342
		Stack = -0.5  for stack of 26-341
	Helix total = -10.2
	Internal/bulge = 3.7  for closure of 27-340	Size = 9
		Stack = -3.3  for stack of 33-335
		Stack = -2.4  for stack of 34-334
		Stack = -3.3  for stack of 35-333
	Helix total = -9.0
	Internal/bulge = 0.5  for closure of 36-332	Size = 1 BP stack across bulge = -3.3
		Stack = -2.5  for stack of 38-331
		Stack = 0.3  for stack of 39-330
		Stack = -2.1  for stack of 40-329
	Helix total = -4.3
	Internal/bulge = 3.3  for closure of 41-328	Size = 7
		Stack = -2.1  for stack of 44-322
		Stack = -1.1  for stack of 45-321
		Stack = -2.1  for stack of 46-320
		Stack = -2.2  for stack of 47-319
	Helix total = -7.5
	Multiloop = 4.8  for closure of 48-318
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 259-294	Size = 2
		Stack = -2.4  for stack of 261-292
		Stack = -3.3  for stack of 262-291
	Helix total = -5.7
	Internal/bulge = 1.9  for closure of 263-290	Size = 3
		Stack = -0.5  for stack of 266-288
	Helix total = -0.5
	Internal/bulge = 2.2  for closure of 267-287	Size = 5
		Stack = -3.4  for stack of 270-283
		Stack = -2.4  for stack of 271-282
	Helix total = -5.8
	Hairpin = 4.4  for closure of 272-281
		Stack = -3.4  for stack of 212-240
		Stack = -2.1  for stack of 213-239
		Stack = 0.3  for stack of 214-238
		Stack = -2.5  for stack of 215-237
		Stack = -2.4  for stack of 216-236
		Stack = -2.2  for stack of 217-235
		Stack = -1.0  for stack of 218-234
		Stack = -2.5  for stack of 219-233
		Stack = -2.1  for stack of 220-232
	Helix total = -17.9
	Hairpin = 6.1  for closure of 221-231
		Stack = -3.3  for stack of 136-195
		Stack = -2.1  for stack of 137-194
		Stack = -0.9  for stack of 138-193
		Stack = -2.1  for stack of 139-192
		Stack = -3.4  for stack of 140-191
		Stack = -2.1  for stack of 141-190
	Helix total = -13.9
	Multiloop = 4.8  for closure of 142-189
		Stack = -3.4  for stack of 163-188
	Helix total = -3.4
	Internal/bulge = 0.2  for closure of 164-187	Size = 4
		Stack = -3.3  for stack of 167-184
		Stack = -1.5  for stack of 168-183
		Stack = -2.1  for stack of 169-182
		Stack = -3.3  for stack of 170-181
		Stack = -2.2  for stack of 171-180
		Stack = -1.3  for stack of 172-179
	Helix total = -13.7
	Hairpin = 4.4  for closure of 173-178
		Stack = -2.1  for stack of 144-161
		Stack = -2.1  for stack of 145-160
		Stack = -3.4  for stack of 146-159
	Helix total = -7.6
	Hairpin = 5.1  for closure of 147-158
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 115-133	Size = 4
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 118-130	Size = 2
	Helix total = 0.0
	Hairpin = 5.5  for closure of 120-128
		Stack = -0.9  for stack of 54-82
		Stack = -2.1  for stack of 55-81
		Stack = -2.4  for stack of 56-80
		Stack = -0.6  for stack of 57-79
		Stack = -1.4  for stack of 58-78
		Stack = -2.1  for stack of 59-77
	Helix total = -9.5
	Hairpin = 5.4  for closure of 60-76


	Total energy = -73.6



