Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    57:80 58:79 59:78 60:77 61:76 153:197 154:196 155:195
	    156:194 201:229 202:228 203:227 204:226 206:224 207:223 208:222
	    210:220 262:300 263:299 264:298 266:295 267:294 268:293
	Energy of Broken Structure: -70.1
	Energy of Pseudo-Helices:   -36.1
	Pseudoknot Energy Penalty:  31.3
	Total Free Energy:          -74.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-360
		Stack = -1.5  for stack of 2-359
		Stack = -2.1  for stack of 3-358
		Stack = -3.3  for stack of 4-357
		Stack = -2.2  for stack of 5-356
		Stack = -2.1  for stack of 6-355
	Helix total = -14.5
	Multiloop = 5.2  for closure of 7-354
		Stack = -3.3  for stack of 337-353
		Stack = -3.3  for stack of 338-352
		Stack = -3.3  for stack of 339-351
		Stack = -3.3  for stack of 340-350
	Helix total = -13.2
	Hairpin = 4.4  for closure of 341-349
		Stack = -2.4  for stack of 21-333
		Stack = -2.5  for stack of 22-332
		Stack = 0.3  for stack of 23-331
		Stack = -0.5  for stack of 24-330
		Stack = -2.1  for stack of 25-329
		Stack = -2.5  for stack of 26-328
		Stack = -0.5  for stack of 27-327
	Helix total = -10.2
	Internal/bulge = 3.6  for closure of 28-326	Size = 9
		Stack = -2.5  for stack of 34-321
		Stack = -2.1  for stack of 35-320
		Stack = -2.1  for stack of 36-319
	Helix total = -6.7
	Internal/bulge = 1.5  for closure of 37-318	Size = 3
		Stack = -2.1  for stack of 40-316
		Stack = -2.1  for stack of 41-315
	Helix total = -4.2
	Internal/bulge = 2.5  for closure of 42-314	Size = 8
		Stack = -2.1  for stack of 46-308
		Stack = -1.1  for stack of 47-307
		Stack = -1.3  for stack of 48-306
		Stack = -2.2  for stack of 49-305
	Helix total = -6.7
	Multiloop = 2.8  for closure of 50-304
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 247-283	Size = 2
		Stack = -2.1  for stack of 249-281
		Stack = -0.6  for stack of 250-280
	Helix total = -2.7
	Internal/bulge = 1.4  for closure of 251-279	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.1  for closure of 254-276	Size = 7
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 258-271	Size = 2
	Helix total = 0.0
	Hairpin = 3.4  for closure of 260-269
		Stack = -1.5  for stack of 211-246
		Stack = -2.1  for stack of 212-245
		Stack = -2.2  for stack of 213-244
		Stack = -0.9  for stack of 214-243
		Stack = -1.3  for stack of 215-242
		Stack = -2.2  for stack of 216-241
		Stack = -2.1  for stack of 217-240
		Stack = -0.6  for stack of 218-239
	Helix total = -12.9
	Hairpin = 5.6  for closure of 219-238
		Stack = -2.4  for stack of 138-184
		Stack = -3.4  for stack of 139-183
		Stack = -2.1  for stack of 140-182
		Stack = -2.1  for stack of 141-181
		Stack = -3.4  for stack of 142-180
	Helix total = -13.4
	Multiloop = 3.6  for closure of 143-179
		Stack = -2.1  for stack of 165-176
		Stack = -2.1  for stack of 166-175
		Stack = -3.3  for stack of 167-174
	Helix total = -7.5
	Hairpin = 3.1  for closure of 168-173
		Stack = -3.3  for stack of 145-164
	Helix total = -3.3
	Internal/bulge = 0.0  for closure of 146-163	Size = 4
	Helix total = 0.0
	Hairpin = 5.4  for closure of 149-160
		Stack = -2.4  for stack of 114-137
		Stack = -2.1  for stack of 115-136
		Stack = -1.0  for stack of 116-135
		Stack = -2.1  for stack of 117-134
		Stack = -3.4  for stack of 118-133
		Stack = -3.3  for stack of 119-132
		Stack = -2.4  for stack of 120-131
	Helix total = -16.7
	Hairpin = 4.8  for closure of 121-130
		Stack = -2.4  for stack of 51-68
		Stack = -2.4  for stack of 52-67
		Stack = -2.1  for stack of 53-66
		Stack = -3.3  for stack of 54-65
	Helix total = -10.2
	Hairpin = 4.4  for closure of 55-64


	Total energy = -70.1



