Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    53:80 54:79 55:78 56:77 58:75 157:195 158:194 159:193
	    160:192 161:191 163:189 220:245 221:244 222:243 223:242 224:241
	    225:240 259:304 260:303 261:302 262:301 263:300 264:299 265:298
	Energy of Broken Structure: -78.0
	Energy of Pseudo-Helices:   -43.1
	Pseudoknot Energy Penalty:  50.5
	Total Free Energy:          -70.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-365
		Stack = -1.5  for stack of 2-364
		Stack = -2.1  for stack of 3-363
		Stack = -3.3  for stack of 4-362
		Stack = -3.4  for stack of 5-361
		Stack = -2.4  for stack of 6-360
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-359
		Stack = -3.4  for stack of 342-358
		Stack = -2.4  for stack of 343-357
		Stack = -3.3  for stack of 344-356
		Stack = -3.3  for stack of 345-355
	Helix total = -12.4
	Hairpin = 4.4  for closure of 346-354
		Stack = -2.4  for stack of 20-338
		Stack = -1.5  for stack of 21-337
		Stack = -2.1  for stack of 22-336
		Stack = -1.5  for stack of 23-335
		Stack = -1.3  for stack of 24-334
	Helix total = -8.8
	Internal/bulge = 1.9  for closure of 25-333	Size = 2
		Stack = -2.1  for stack of 27-331
	Helix total = -2.1
	Internal/bulge = 2.4  for closure of 28-330	Size = 7
		Stack = -0.6  for stack of 33-326
	Helix total = -0.6
	Internal/bulge = 3.4  for closure of 34-325	Size = 6
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 38-321	Size = 2
		Stack = -2.5  for stack of 40-319
	Helix total = -2.5
	Internal/bulge = 4.4  for closure of 41-318	Size = 6
		Stack = -2.4  for stack of 43-312
		Stack = -2.2  for stack of 44-311
		Stack = -2.1  for stack of 45-310
		Stack = -3.4  for stack of 46-309
	Helix total = -10.1
	Multiloop = 3.1  for closure of 47-308
		Stack = -1.1  for stack of 248-280
		Stack = -2.4  for stack of 249-279
		Stack = -3.3  for stack of 250-278
	Helix total = -6.8
	Internal/bulge = 0.8  for closure of 251-277	Size = 4
		Stack = -1.4  for stack of 254-274
	Helix total = -1.4
	Internal/bulge = 5.1  for closure of 255-273	Size = 6
		Stack = -2.1  for stack of 257-267
	Helix total = -2.1
	Hairpin = 5.7  for closure of 258-266
		Stack = -0.9  for stack of 211-239
		Stack = -2.4  for stack of 212-238
		Stack = -2.1  for stack of 213-237
		Stack = -2.1  for stack of 214-236
		Stack = -1.5  for stack of 215-235
		Stack = -2.1  for stack of 216-234
		Stack = -1.5  for stack of 217-233
	Helix total = -12.6
	Hairpin = 4.4  for closure of 218-232
		Stack = -2.4  for stack of 142-179
		Stack = -2.2  for stack of 143-178
		Stack = -1.3  for stack of 144-177
		Stack = -1.4  for stack of 145-176
		Stack = -3.3  for stack of 146-175
		Stack = -3.4  for stack of 147-174
		Stack = -2.4  for stack of 148-173
		Stack = -2.2  for stack of 149-172
		Stack = -2.4  for stack of 150-171
		Stack = -3.3  for stack of 151-170
		Stack = -2.4  for stack of 152-169
		Stack = -2.5  for stack of 153-168
		Stack = -1.4  for stack of 154-167
	Helix total = -30.6
	Hairpin = 4.0  for closure of 155-166
		Stack = -3.3  for stack of 116-141
		Stack = -3.4  for stack of 117-140
	Helix total = -6.7
	Internal/bulge = 1.2  for closure of 118-139	Size = 2
		Stack = -2.5  for stack of 120-137
		Stack = -3.3  for stack of 121-136
		Stack = -2.1  for stack of 122-135
		Stack = -1.3  for stack of 123-134
		Stack = -0.9  for stack of 124-133
		Stack = -0.9  for stack of 125-132
	Helix total = -11.0
	Hairpin = 4.4  for closure of 126-131
		Stack = -2.4  for stack of 48-67
		Stack = -2.4  for stack of 49-66
		Stack = -2.1  for stack of 50-65
		Stack = -3.3  for stack of 51-64
	Helix total = -10.2
	Hairpin = 5.4  for closure of 52-63


	Total energy = -78.0



