Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    172:267 173:266 174:265 175:264 176:263
	Energy of Broken Structure: 2765.4
	Energy of Pseudo-Helices:   4197.9
	Pseudoknot Energy Penalty:  8.6
	Total Free Energy:          6971.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.9
		Stack = -2.1  for stack of 44-300
		Stack = -1.5  for stack of 45-299
	Helix total = -3.6
	Internal/bulge = 0.5  for closure of 46-298	Size = 2
		Stack = -3.3  for stack of 48-296
		Stack = -2.2  for stack of 49-295
		Stack = -2.1  for stack of 50-294
	Helix total = -7.6
	Internal/bulge = 2.4  for closure of 51-293	Size = 7
		Stack = -2.1  for stack of 56-289
		Stack = -3.4  for stack of 57-288
		Stack = -2.1  for stack of 58-287
	Helix total = -7.6
	Internal/bulge = 3.5  for closure of 59-286	Size = 7
		Stack = -1.4  for stack of 63-281
	Helix total = -1.4
	Internal/bulge = 4.2  for closure of 64-280	Size = 8
		Stack = -1.0  for stack of 70-276
	Helix total = -1.0
	Internal/bulge = 7.1  for closure of 71-275	Size = 22
		Stack = -3.3  for stack of 80-260
		Stack = -3.4  for stack of 81-259
		Stack = -2.1  for stack of 82-258
		Stack = -0.5  for stack of 83-257
		Stack = 0.3  for stack of 84-256
	Helix total = -9.0
	Internal/bulge = 3.9  for closure of 85-255	Size = 8
	Helix total = 0.0
	Internal/bulge = 6.5  for closure of 91-251	Size = 12
		Stack = -1.4  for stack of 100-246
		Stack = -3.3  for stack of 101-245
		Stack = -3.4  for stack of 102-244
		Stack = -3.3  for stack of 103-243
		Stack = -2.1  for stack of 104-242
		Stack = -2.1  for stack of 105-241
	Helix total = -15.6
	Internal/bulge = 3.8  for closure of 106-240	Size = 5
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 108-235	Size = 3
		Stack = -0.9  for stack of 111-233
		Stack = -2.4  for stack of 112-232
		Stack = -3.3  for stack of 113-231
		Stack = -2.1  for stack of 114-230
	Helix total = -8.7
	Internal/bulge = 4.0  for closure of 115-229	Size = 5
		Stack = -0.9  for stack of 118-225
		Stack = -2.1  for stack of 119-224
		Stack = -3.3  for stack of 120-223
	Helix total = -6.3
	Internal/bulge = 1.2  for closure of 121-222	Size = 2
		Stack = -2.1  for stack of 123-220
	Helix total = -2.1
	Multiloop = 5.5  for closure of 124-219
		Stack = -2.4  for stack of 183-208
	Helix total = -2.4
	Internal/bulge = 1.7  for closure of 184-207	Size = 10
		Stack = -2.1  for stack of 190-201
		Stack = -2.1  for stack of 191-200
	Helix total = -4.2
	Hairpin = 2.9  for closure of 192-199
		Stack = -2.1  for stack of 165-170
	Helix total = -2.1
	Hairpin = 1400.5  for closure of 166-169
		Stack = -2.1  for stack of 129-162
	Helix total = -2.1
	Internal/bulge = 1.9  for closure of 130-161	Size = 2
		Stack = -2.1  for stack of 132-159
	Helix total = -2.1
	Internal/bulge = 0.7  for closure of 133-158	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.9  for closure of 135-156	Size = 10
		Stack = -2.1  for stack of 141-150
		Stack = -3.4  for stack of 142-149
	Helix total = -5.5
	Hairpin = 3.3  for closure of 143-148
		Stack = -3.4  for stack of 1-39
		Stack = -3.3  for stack of 2-38
	Helix total = -6.7
	Multiloop = 5.8  for closure of 3-37
		Stack = -3.3  for stack of 27-36
		Stack = -3.3  for stack of 28-35
		Stack = -2.1  for stack of 29-34
	Helix total = -8.7
	Hairpin = 1400.5  for closure of 30-33
		Stack = -2.1  for stack of 5-21
		Stack = -3.4  for stack of 6-20
		Stack = -2.1  for stack of 7-19
	Helix total = -7.6
	Hairpin = 5.9  for closure of 8-18


	Total energy = 2765.4



