Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    117:195 119:194 120:193 121:192 122:191 123:190
	Energy of Broken Structure: -62.8
	Energy of Pseudo-Helices:   -8.0
	Pseudoknot Energy Penalty:  7.7
	Total Free Energy:          -63.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -5.9
		Stack = -2.1  for stack of 232-254
		Stack = -1.5  for stack of 233-253
		Stack = -1.4  for stack of 234-252
		Stack = -1.3  for stack of 235-251
		Stack = -0.9  for stack of 236-250
		Stack = -2.1  for stack of 237-249
	Helix total = -9.3
	Hairpin = 4.9  for closure of 238-248
		Stack = -1.4  for stack of 218-231
		Stack = -3.3  for stack of 219-230
		Stack = -2.4  for stack of 220-229
	Helix total = -7.1
	Hairpin = 4.2  for closure of 221-228
		Stack = -2.1  for stack of 199-216
		Stack = -2.1  for stack of 200-215
		Stack = -3.4  for stack of 201-214
		Stack = -2.1  for stack of 202-213
		Stack = -1.1  for stack of 203-212
		Stack = -2.1  for stack of 204-211
	Helix total = -12.9
	Hairpin = 3.1  for closure of 205-210
		Stack = -2.1  for stack of 164-183
		Stack = -0.9  for stack of 165-182
		Stack = -2.2  for stack of 166-181
		Stack = -2.1  for stack of 167-180
		Stack = -0.9  for stack of 168-179
		Stack = -2.1  for stack of 169-178
	Helix total = -10.3
	Hairpin = 4.3  for closure of 170-177
		Stack = -2.4  for stack of 47-163
		Stack = -2.1  for stack of 48-162
		Stack = -1.3  for stack of 49-161
		Stack = -1.1  for stack of 50-160
		Stack = -2.4  for stack of 51-159
	Helix total = -9.3
	Multiloop = 4.2  for closure of 52-158
		Stack = -1.5  for stack of 139-152
		Stack = -2.1  for stack of 140-151
		Stack = -2.2  for stack of 141-150
		Stack = -2.4  for stack of 142-149
	Helix total = -8.2
	Hairpin = 4.1  for closure of 143-148
		Stack = -2.4  for stack of 124-135
		Stack = -3.3  for stack of 125-134
		Stack = -3.3  for stack of 126-133
	Helix total = -9.0
	Hairpin = 3.7  for closure of 127-132
		Stack = -3.4  for stack of 86-113
	Helix total = -3.4
	Internal/bulge = 2.0  for closure of 87-112	Size = 10
		Stack = -2.1  for stack of 93-106
		Stack = -2.2  for stack of 94-105
		Stack = -1.3  for stack of 95-104
	Helix total = -5.6
	Hairpin = 5.4  for closure of 96-103
		Stack = -2.2  for stack of 56-85
		Stack = -2.4  for stack of 57-84
		Stack = -3.3  for stack of 58-83
		Stack = -3.3  for stack of 59-82
		Stack = -1.5  for stack of 60-81
	Helix total = -12.7
	Internal/bulge = 4.1  for closure of 61-80	Size = 7
		Stack = -2.4  for stack of 66-76
		Stack = -2.1  for stack of 67-75
	Helix total = -4.5
	Hairpin = 5.7  for closure of 68-74
		Stack = -2.2  for stack of 23-40
		Stack = -1.3  for stack of 24-39
		Stack = -1.1  for stack of 25-38
		Stack = -1.3  for stack of 26-37
		Stack = -0.9  for stack of 27-36
		Stack = -2.1  for stack of 28-35
	Helix total = -8.9
	Hairpin = 3.1  for closure of 29-34
		Stack = -1.3  for stack of 3-22
		Stack = 0.3  for stack of 4-21
		Stack = -2.1  for stack of 5-20
		Stack = -3.3  for stack of 6-19
		Stack = -2.5  for stack of 7-18
		Stack = -0.5  for stack of 8-17
	Helix total = -9.4
	Hairpin = 4.9  for closure of 9-16


	Total energy = -62.8



