Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    293:314 294:313 295:312
	Energy of Broken Structure: -46.2
	Energy of Pseudo-Helices:   -6.6
	Pseudoknot Energy Penalty:  6.9
	Total Free Energy:          -45.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.7
		Stack = -3.4  for stack of 25-344
		Stack = -2.1  for stack of 26-343
		Stack = -0.9  for stack of 27-342
	Helix total = -6.4
	Internal/bulge = 3.7  for closure of 28-341	Size = 3
		Stack = -1.1  for stack of 31-339
		Stack = -1.0  for stack of 32-338
		Stack = -2.5  for stack of 33-337
	Helix total = -4.6
	Multiloop = 7.5  for closure of 34-336
		Stack = -2.2  for stack of 288-333
		Stack = -2.1  for stack of 289-332
		Stack = -2.2  for stack of 290-331
		Stack = -3.3  for stack of 291-330
	Helix total = -9.8
	Internal/bulge = 4.4  for closure of 292-329	Size = 6
		Stack = -3.4  for stack of 299-328
		Stack = -2.1  for stack of 300-327
		Stack = -2.2  for stack of 301-326
		Stack = -2.4  for stack of 302-325
	Helix total = -10.1
	Hairpin = 6.1  for closure of 303-324
		Stack = -1.3  for stack of 38-281
		Stack = -2.1  for stack of 39-280
		Stack = -3.4  for stack of 40-279
		Stack = -1.4  for stack of 41-278
		Stack = -2.1  for stack of 42-277
	Helix total = -10.3
	Multiloop = 7.8  for closure of 43-276
	Helix total = 0.0
	Internal/bulge = 0.9  for closure of 244-271	Size = 1 BP stack across bulge = -2.1
		Stack = -3.3  for stack of 246-270
		Stack = -2.4  for stack of 247-269
	Helix total = -5.7
	Internal/bulge = 3.7  for closure of 248-268	Size = 4
		Stack = -1.5  for stack of 252-266
		Stack = -2.4  for stack of 253-265
		Stack = -3.4  for stack of 254-264
		Stack = -2.1  for stack of 255-263
	Helix total = -9.4
	Hairpin = 5.6  for closure of 256-262
	Helix total = 0.0
	Internal/bulge = 5.2  for closure of 46-238	Size = 5
		Stack = -1.0  for stack of 51-236
		Stack = -2.2  for stack of 52-235
	Helix total = -3.2
	Internal/bulge = 1.7  for closure of 53-234	Size = 1 BP stack across bulge = -2.1
		Stack = -2.1  for stack of 55-233
		Stack = -3.4  for stack of 56-232
	Helix total = -5.5
	Multiloop = 1.5  for closure of 57-231
		Stack = -2.2  for stack of 216-227
		Stack = -0.9  for stack of 217-226
		Stack = -2.4  for stack of 218-225
	Helix total = -5.5
	Hairpin = 3.5  for closure of 219-224
		Stack = -2.2  for stack of 194-214
		Stack = -2.1  for stack of 195-213
		Stack = -3.3  for stack of 196-212
		Stack = -3.4  for stack of 197-211
	Helix total = -11.0
	Hairpin = 5.2  for closure of 198-210
		Stack = -2.2  for stack of 80-192
		Stack = -2.1  for stack of 81-191
	Helix total = -4.3
	Multiloop = 5.1  for closure of 82-190
		Stack = -3.4  for stack of 168-189
		Stack = -3.3  for stack of 169-188
		Stack = -2.1  for stack of 170-187
	Helix total = -8.8
	Internal/bulge = 3.3  for closure of 171-186	Size = 6
		Stack = -2.1  for stack of 174-181
	Helix total = -2.1
	Hairpin = 5.5  for closure of 175-180
		Stack = -2.1  for stack of 114-165
		Stack = -3.3  for stack of 115-164
	Helix total = -5.4
	Internal/bulge = 2.3  for closure of 116-163	Size = 8
		Stack = -3.4  for stack of 121-158
	Helix total = -3.4
	Internal/bulge = 2.9  for closure of 122-157	Size = 6
		Stack = -2.1  for stack of 127-154
		Stack = -3.3  for stack of 128-153
		Stack = -3.3  for stack of 129-152
		Stack = -2.5  for stack of 130-151
		Stack = -1.5  for stack of 131-150
		Stack = -2.4  for stack of 132-149
	Helix total = -15.1
	Hairpin = 5.8  for closure of 133-148
		Stack = -1.4  for stack of 88-113
	Helix total = -1.4
	Internal/bulge = 1.2  for closure of 89-112	Size = 2
		Stack = -2.4  for stack of 91-110
		Stack = -1.5  for stack of 92-109
		Stack = -2.1  for stack of 93-108
	Helix total = -6.0
	Hairpin = 5.6  for closure of 94-107
		Stack = -2.5  for stack of 60-73
		Stack = -2.1  for stack of 61-72
		Stack = -0.9  for stack of 62-71
	Helix total = -5.5
	Hairpin = 4.9  for closure of 63-70
		Stack = -2.4  for stack of 7-23
		Stack = -2.1  for stack of 8-22
		Stack = -2.5  for stack of 9-21
		Stack = -0.5  for stack of 10-20
	Helix total = -7.5
	Hairpin = 5.1  for closure of 11-19


	Total energy = -46.2



