Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    238:263 239:262 240:261
	Energy of Broken Structure: -19.3
	Energy of Pseudo-Helices:   -4.8
	Pseudoknot Energy Penalty:  7.0
	Total Free Energy:          -17.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -2.5
		Stack = -2.4  for stack of 22-281
		Stack = -2.1  for stack of 23-280
		Stack = -1.3  for stack of 24-279
		Stack = -1.1  for stack of 25-278
		Stack = -0.9  for stack of 26-277
	Helix total = -7.8
	Internal/bulge = 1.9  for closure of 27-276	Size = 2
		Stack = -2.5  for stack of 29-274
		Stack = -2.1  for stack of 30-273
	Helix total = -4.6
	Multiloop = 5.7  for closure of 31-272
		Stack = -3.3  for stack of 225-270
		Stack = -3.3  for stack of 226-269
		Stack = -2.2  for stack of 227-268
		Stack = -0.9  for stack of 228-267
	Helix total = -9.7
	Internal/bulge = 5.8  for closure of 229-266	Size = 14
		Stack = -3.3  for stack of 230-251
		Stack = -2.2  for stack of 231-250
	Helix total = -5.5
	Hairpin = 6.9  for closure of 232-249
		Stack = -0.9  for stack of 33-219
		Stack = -1.3  for stack of 34-218
		Stack = -2.1  for stack of 35-217
		Stack = -2.2  for stack of 36-216
		Stack = -1.3  for stack of 37-215
	Helix total = -7.8
	Internal/bulge = 2.9  for closure of 38-214	Size = 1 BP stack across bulge = -0.9
		Stack = -2.1  for stack of 39-212
	Helix total = -2.1
	Multiloop = 5.6  for closure of 40-211
	Helix total = 0.0
	Internal/bulge = 2.3  for closure of 183-209	Size = 1 BP stack across bulge = -0.9
		Stack = -1.3  for stack of 185-208
		Stack = -2.1  for stack of 186-207
	Helix total = -3.4
	Internal/bulge = 3.0  for closure of 187-206	Size = 4
		Stack = -1.3  for stack of 191-204
		Stack = -0.9  for stack of 192-203
		Stack = -0.9  for stack of 193-202
		Stack = -2.2  for stack of 194-201
	Helix total = -5.3
	Hairpin = 3.3  for closure of 195-200
		Stack = -2.1  for stack of 45-175
		Stack = -2.2  for stack of 46-174
	Helix total = -4.3
	Internal/bulge = 1.7  for closure of 47-173	Size = 1 BP stack across bulge = -2.1
		Stack = -2.1  for stack of 49-172
		Stack = -3.4  for stack of 50-171
	Helix total = -5.5
	Multiloop = 2.9  for closure of 51-170
		Stack = -3.3  for stack of 157-164
	Helix total = -3.3
	Hairpin = 3.7  for closure of 158-163
		Stack = -2.2  for stack of 68-153
		Stack = -2.1  for stack of 69-152
	Helix total = -4.3
	Multiloop = 4.2  for closure of 70-151
		Stack = -3.4  for stack of 144-150
	Helix total = -3.4
	Hairpin = 5.4  for closure of 145-149
		Stack = -2.1  for stack of 107-141
		Stack = -3.4  for stack of 108-140
	Helix total = -5.5
	Internal/bulge = 4.4  for closure of 109-139	Size = 10
		Stack = -2.1  for stack of 114-132
		Stack = -3.4  for stack of 115-131
	Helix total = -5.5
	Internal/bulge = 2.3  for closure of 116-130	Size = 3
		Stack = -3.4  for stack of 119-128
		Stack = -2.1  for stack of 120-127
	Helix total = -5.5
	Hairpin = 4.4  for closure of 121-126
		Stack = -3.3  for stack of 78-102
		Stack = -2.1  for stack of 79-101
	Helix total = -5.4
	Internal/bulge = 3.7  for closure of 80-100	Size = 8
		Stack = -1.1  for stack of 85-95
		Stack = -2.4  for stack of 86-94
	Helix total = -3.5
	Hairpin = 4.2  for closure of 87-93
	Helix total = 0.0
	Hairpin = 4.7  for closure of 54-61
		Stack = -2.1  for stack of 4-20
		Stack = -3.3  for stack of 5-19
		Stack = -2.5  for stack of 6-18
		Stack = -0.6  for stack of 7-17
	Helix total = -8.5
	Hairpin = 5.1  for closure of 8-16


	Total energy = -19.3



