Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    12:1200 13:1199 14:1198 601:622 602:621 603:620
	Energy of Broken Structure: -317.8
	Energy of Pseudo-Helices:   -12.4
	Pseudoknot Energy Penalty:  14.8
	Total Free Energy:          -315.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -8.0
		Stack = -0.6  for stack of 1839-1862
		Stack = -0.9  for stack of 1840-1861
		Stack = -2.4  for stack of 1841-1860
		Stack = -3.3  for stack of 1842-1859
		Stack = -2.4  for stack of 1843-1858
		Stack = -2.5  for stack of 1844-1857
		Stack = -1.0  for stack of 1845-1856
		Stack = -2.1  for stack of 1846-1855
		Stack = -3.3  for stack of 1847-1854
	Helix total = -18.5
	Hairpin = 4.5  for closure of 1848-1853
	Helix total = 0.0
	Internal/bulge = 2.3  for closure of 1701-1837	Size = 3
	Helix total = 0.0
	Internal/bulge = 2.6  for closure of 1703-1834	Size = 5
		Stack = -2.4  for stack of 1706-1830
	Helix total = -2.4
	Internal/bulge = -0.6  for closure of 1707-1829	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.2  for closure of 1709-1827	Size = 5
		Stack = -1.3  for stack of 1712-1823
		Stack = -2.2  for stack of 1713-1822
		Stack = -2.1  for stack of 1714-1821
	Helix total = -5.6
	Internal/bulge = 3.0  for closure of 1715-1820	Size = 3
	Helix total = 0.0
	Internal/bulge = 1.1  for closure of 1718-1818	Size = 4
		Stack = -0.6  for stack of 1721-1815
		Stack = -1.0  for stack of 1722-1814
		Stack = -2.1  for stack of 1723-1813
		Stack = -2.4  for stack of 1724-1812
		Stack = -1.1  for stack of 1725-1811
		Stack = -1.0  for stack of 1726-1810
		Stack = -2.1  for stack of 1727-1809
		Stack = -2.2  for stack of 1728-1808
		Stack = -1.3  for stack of 1729-1807
	Helix total = -13.8
	Internal/bulge = 1.9  for closure of 1730-1806	Size = 2
		Stack = -2.1  for stack of 1732-1804
		Stack = -2.2  for stack of 1733-1803
	Helix total = -4.3
	Internal/bulge = 0.0  for closure of 1734-1802	Size = 4
		Stack = -1.5  for stack of 1737-1799
		Stack = -2.5  for stack of 1738-1798
		Stack = -3.3  for stack of 1739-1797
	Helix total = -7.3
	Internal/bulge = 1.2  for closure of 1740-1796	Size = 2
		Stack = -2.4  for stack of 1742-1794
	Helix total = -2.4
	Internal/bulge = 0.7  for closure of 1743-1793	Size = 6
		Stack = -2.4  for stack of 1747-1789
		Stack = -1.4  for stack of 1748-1788
		Stack = -2.1  for stack of 1749-1787
		Stack = -3.4  for stack of 1750-1786
	Helix total = -9.3
	Internal/bulge = 2.3  for closure of 1751-1785	Size = 4
		Stack = -3.3  for stack of 1753-1781
		Stack = -2.4  for stack of 1754-1780
		Stack = -3.4  for stack of 1755-1779
		Stack = -3.3  for stack of 1756-1778
		Stack = -1.4  for stack of 1757-1777
		Stack = -2.1  for stack of 1758-1776
		Stack = -3.3  for stack of 1759-1775
		Stack = -3.3  for stack of 1760-1774
		Stack = -2.5  for stack of 1761-1773
		Stack = -1.5  for stack of 1762-1772
		Stack = -2.4  for stack of 1763-1771
	Helix total = -28.9
	Hairpin = 3.2  for closure of 1764-1770
		Stack = -2.1  for stack of 1203-1698
	Helix total = -2.1
	Internal/bulge = 1.4  for closure of 1204-1697	Size = 1 BP stack across bulge = -2.4
		Stack = -2.2  for stack of 1205-1695
		Stack = -1.4  for stack of 1206-1694
	Helix total = -3.6
	Internal/bulge = 2.1  for closure of 1207-1693	Size = 1 BP stack across bulge = -1.3
		Stack = -0.9  for stack of 1209-1692
		Stack = -2.1  for stack of 1210-1691
		Stack = -3.3  for stack of 1211-1690
		Stack = -3.3  for stack of 1212-1689
		Stack = -3.4  for stack of 1213-1688
		Stack = -2.1  for stack of 1214-1687
	Helix total = -15.1
	Multiloop = 8.6  for closure of 1215-1686
		Stack = -0.6  for stack of 1652-1674
		Stack = 1.3  for stack of 1653-1673
		Stack = -1.4  for stack of 1654-1672
		Stack = -3.4  for stack of 1655-1671
		Stack = -1.4  for stack of 1656-1670
		Stack = -0.5  for stack of 1657-1669
		Stack = -2.1  for stack of 1658-1668
	Helix total = -8.1
	Hairpin = 4.9  for closure of 1659-1667
		Stack = -3.3  for stack of 1222-1646
		Stack = -2.4  for stack of 1223-1645
		Stack = -0.6  for stack of 1224-1644
		Stack = -1.4  for stack of 1225-1643
	Helix total = -7.7
	Multiloop = 5.0  for closure of 1226-1642
	Helix total = 0.0
	Internal/bulge = 1.5  for closure of 1605-1636	Size = 10
		Stack = -3.3  for stack of 1611-1630
		Stack = -3.3  for stack of 1612-1629
		Stack = -3.3  for stack of 1613-1628
		Stack = -2.4  for stack of 1614-1627
	Helix total = -12.3
	Hairpin = 5.3  for closure of 1615-1626
		Stack = -2.4  for stack of 1537-1598
	Helix total = -2.4
	Internal/bulge = 1.9  for closure of 1538-1597	Size = 2
		Stack = -2.1  for stack of 1540-1595
		Stack = -3.3  for stack of 1541-1594
	Helix total = -5.4
	Internal/bulge = 3.4  for closure of 1542-1593	Size = 12
		Stack = 1.3  for stack of 1549-1586
		Stack = -1.4  for stack of 1550-1585
	Helix total = -0.1
	Internal/bulge = 3.4  for closure of 1551-1584	Size = 7
		Stack = -1.3  for stack of 1556-1580
		Stack = -2.2  for stack of 1557-1579
		Stack = -3.3  for stack of 1558-1578
		Stack = -3.3  for stack of 1559-1577
	Helix total = -10.1
	Internal/bulge = 2.3  for closure of 1560-1576	Size = 3
		Stack = -2.4  for stack of 1563-1574
		Stack = -3.4  for stack of 1564-1573
		Stack = -3.3  for stack of 1565-1572
	Helix total = -9.1
	Hairpin = 3.3  for closure of 1566-1571
		Stack = -2.1  for stack of 1229-1531
		Stack = -3.4  for stack of 1230-1530
	Helix total = -5.5
	Internal/bulge = 1.2  for closure of 1231-1529	Size = 2
		Stack = -1.4  for stack of 1233-1527
		Stack = -3.4  for stack of 1234-1526
		Stack = -2.4  for stack of 1235-1525
	Helix total = -7.2
	Internal/bulge = 0.5  for closure of 1236-1524	Size = 1 BP stack across bulge = -3.3
		Stack = -3.4  for stack of 1237-1522
	Helix total = -3.4
	Multiloop = 6.9  for closure of 1238-1521
		Stack = -3.3  for stack of 1267-1517
		Stack = -3.3  for stack of 1268-1516
		Stack = -2.4  for stack of 1269-1515
		Stack = -3.3  for stack of 1270-1514
	Helix total = -12.3
	Internal/bulge = 0.5  for closure of 1271-1513	Size = 2
	Helix total = 0.0
	Multiloop = 6.7  for closure of 1273-1511
		Stack = -2.1  for stack of 1325-1505
	Helix total = -2.1
	Internal/bulge = 0.5  for closure of 1326-1504	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 1328-1503
		Stack = -2.5  for stack of 1329-1502
		Stack = 0.3  for stack of 1330-1501
	Helix total = -5.5
	Internal/bulge = 3.8  for closure of 1331-1500	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.8  for closure of 1334-1499	Size = 1 BP stack across bulge = -1.0
	Helix total = 0.0
	Internal/bulge = 4.2  for closure of 1335-1497	Size = 3
		Stack = -2.5  for stack of 1336-1493
		Stack = -3.3  for stack of 1337-1492
	Helix total = -5.8
	Internal/bulge = 1.4  for closure of 1338-1491	Size = 1 BP stack across bulge = -2.4
		Stack = -2.2  for stack of 1339-1489
		Stack = -0.9  for stack of 1340-1488
	Helix total = -3.1
	Internal/bulge = 1.9  for closure of 1341-1487	Size = 2
	Helix total = 0.0
	Multiloop = 7.3  for closure of 1343-1485
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 1391-1482	Size = 2
		Stack = 0.3  for stack of 1393-1480
		Stack = -0.5  for stack of 1394-1479
	Helix total = -0.2
	Multiloop = 6.7  for closure of 1395-1478
		Stack = -2.2  for stack of 1457-1471
		Stack = -2.1  for stack of 1458-1470
		Stack = -3.3  for stack of 1459-1469
		Stack = -3.4  for stack of 1460-1468
	Helix total = -11.0
	Hairpin = 3.4  for closure of 1461-1467
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 1396-1451	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.4  for closure of 1398-1449	Size = 1 BP stack across bulge = -2.4
		Stack = -2.1  for stack of 1400-1448
		Stack = -1.3  for stack of 1401-1447
		Stack = -0.9  for stack of 1402-1446
	Helix total = -4.3
	Internal/bulge = 1.7  for closure of 1403-1445	Size = 4
		Stack = -2.1  for stack of 1406-1442
		Stack = -2.2  for stack of 1407-1441
		Stack = -0.9  for stack of 1408-1440
	Helix total = -5.2
	Internal/bulge = 3.0  for closure of 1409-1439	Size = 8
		Stack = -2.4  for stack of 1414-1434
		Stack = -2.2  for stack of 1415-1433
	Helix total = -4.6
	Internal/bulge = 2.3  for closure of 1416-1432	Size = 3
		Stack = -3.3  for stack of 1419-1430
		Stack = -2.4  for stack of 1420-1429
		Stack = -2.4  for stack of 1421-1428
	Helix total = -8.1
	Hairpin = 4.5  for closure of 1422-1427
		Stack = -2.2  for stack of 1346-1385
		Stack = -0.9  for stack of 1347-1384
	Helix total = -3.1
	Internal/bulge = -1.4  for closure of 1348-1383	Size = 2
		Stack = -2.2  for stack of 1350-1381
	Helix total = -2.2
	Multiloop = 8.8  for closure of 1351-1380
		Stack = -1.4  for stack of 1365-1376
		Stack = -3.3  for stack of 1366-1375
	Helix total = -4.7
	Hairpin = 3.8  for closure of 1367-1374
		Stack = -0.5  for stack of 1352-1361
		Stack = -1.3  for stack of 1353-1360
	Helix total = -1.8
	Hairpin = 4.4  for closure of 1354-1359
		Stack = -2.1  for stack of 1278-1321
		Stack = -2.2  for stack of 1279-1320
		Stack = -2.4  for stack of 1280-1319
		Stack = -3.3  for stack of 1281-1318
	Helix total = -10.0
	Internal/bulge = 3.5  for closure of 1282-1317	Size = 14
		Stack = -2.4  for stack of 1291-1310
	Helix total = -2.4
	Internal/bulge = 1.9  for closure of 1292-1309	Size = 2
		Stack = -2.1  for stack of 1294-1307
		Stack = -2.4  for stack of 1295-1306
	Helix total = -4.5
	Hairpin = 5.2  for closure of 1296-1305
		Stack = -0.5  for stack of 1243-1258
		Stack = -0.5  for stack of 1244-1257
		Stack = -1.4  for stack of 1245-1256
	Helix total = -2.4
	Hairpin = 4.4  for closure of 1246-1255
		Stack = -2.1  for stack of 1176-1187
		Stack = -2.5  for stack of 1177-1186
		Stack = -0.6  for stack of 1178-1185
	Helix total = -5.2
	Hairpin = 4.1  for closure of 1179-1184
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 663-1165	Size = 2
	Helix total = 0.0
	Internal/bulge = 4.5  for closure of 665-1163	Size = 5
	Helix total = 0.0
	Multiloop = 5.6  for closure of 671-1162
		Stack = -2.5  for stack of 1090-1161
		Stack = -3.3  for stack of 1091-1160
	Helix total = -5.8
	Internal/bulge = 3.6  for closure of 1092-1159	Size = 4
		Stack = -2.4  for stack of 1093-1154
		Stack = -2.2  for stack of 1094-1153
	Helix total = -4.6
	Multiloop = 4.9  for closure of 1095-1152
		Stack = -3.3  for stack of 1141-1148
	Helix total = -3.3
	Hairpin = 3.1  for closure of 1142-1147
		Stack = -3.4  for stack of 1098-1136
	Helix total = -3.4
	Internal/bulge = 0.3  for closure of 1099-1135	Size = 8
		Stack = -2.4  for stack of 1104-1130
		Stack = -3.3  for stack of 1105-1129
		Stack = -3.4  for stack of 1106-1128
		Stack = -2.4  for stack of 1107-1127
		Stack = -3.3  for stack of 1108-1126
	Helix total = -14.8
	Internal/bulge = 0.5  for closure of 1109-1125	Size = 1 BP stack across bulge = -3.3
		Stack = -2.2  for stack of 1111-1124
		Stack = -1.3  for stack of 1112-1123
		Stack = -1.0  for stack of 1113-1122
		Stack = -1.1  for stack of 1114-1121
	Helix total = -5.6
	Hairpin = 5.5  for closure of 1115-1120
		Stack = -2.2  for stack of 1038-1079
		Stack = -2.4  for stack of 1039-1078
		Stack = -2.4  for stack of 1040-1077
		Stack = -3.3  for stack of 1041-1076
		Stack = -2.4  for stack of 1042-1075
		Stack = -0.6  for stack of 1043-1074
	Helix total = -13.3
	Internal/bulge = 3.7  for closure of 1044-1073	Size = 3
	Helix total = 0.0
	Internal/bulge = 0.0  for closure of 1048-1072	Size = 6
		Stack = -2.4  for stack of 1052-1068
		Stack = -2.2  for stack of 1053-1067
		Stack = -2.4  for stack of 1054-1066
	Helix total = -7.0
	Hairpin = 4.9  for closure of 1055-1065
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 673-1033	Size = 2
		Stack = -2.4  for stack of 675-1031
	Helix total = -2.4
	Internal/bulge = 1.7  for closure of 676-1030	Size = 6
		Stack = -1.4  for stack of 680-1026
		Stack = -0.9  for stack of 681-1025
		Stack = -1.0  for stack of 682-1024
	Helix total = -3.3
	Multiloop = 8.0  for closure of 683-1023
		Stack = -1.5  for stack of 923-1020
		Stack = -0.5  for stack of 924-1019
		Stack = -1.3  for stack of 925-1018
	Helix total = -3.3
	Internal/bulge = 0.8  for closure of 926-1017	Size = 1 BP stack across bulge = -2.2
		Stack = -1.4  for stack of 927-1015
	Helix total = -1.4
	Internal/bulge = 1.3  for closure of 928-1014	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.0  for closure of 931-1011	Size = 5
		Stack = -3.3  for stack of 935-1008
		Stack = -3.4  for stack of 936-1007
		Stack = -2.1  for stack of 937-1006
	Helix total = -8.8
	Multiloop = 6.2  for closure of 938-1005
		Stack = -3.4  for stack of 994-1001
	Helix total = -3.4
	Hairpin = 3.3  for closure of 995-1000
		Stack = -2.4  for stack of 941-986
		Stack = -2.2  for stack of 942-985
	Helix total = -4.6
	Internal/bulge = 1.9  for closure of 943-984	Size = 2
		Stack = -0.9  for stack of 945-982
		Stack = -2.1  for stack of 946-981
		Stack = -3.4  for stack of 947-980
		Stack = -2.4  for stack of 948-979
		Stack = -3.4  for stack of 949-978
		Stack = -3.3  for stack of 950-977
		Stack = -2.4  for stack of 951-976
	Helix total = -17.9
	Internal/bulge = 4.9  for closure of 952-975	Size = 10
		Stack = -2.4  for stack of 956-967
		Stack = -0.6  for stack of 957-966
	Helix total = -3.0
	Hairpin = 4.4  for closure of 958-965
		Stack = -2.4  for stack of 749-794
		Stack = -2.4  for stack of 750-793
		Stack = -3.3  for stack of 751-792
	Helix total = -8.1
	Internal/bulge = 0.5  for closure of 752-791	Size = 1 BP stack across bulge = -3.3
		Stack = -3.4  for stack of 754-790
		Stack = -3.3  for stack of 755-789
		Stack = -3.3  for stack of 756-788
		Stack = -3.3  for stack of 757-787
	Helix total = -13.3
	Internal/bulge = 2.7  for closure of 758-786	Size = 7
		Stack = -2.4  for stack of 762-781
		Stack = -1.4  for stack of 763-780
		Stack = 0.3  for stack of 764-779
		Stack = -2.5  for stack of 765-778
		Stack = -2.1  for stack of 766-777
		Stack = -2.4  for stack of 767-776
	Helix total = -10.5
	Hairpin = 3.3  for closure of 768-775
		Stack = -3.3  for stack of 690-741
		Stack = -3.3  for stack of 691-740
	Helix total = -6.6
	Internal/bulge = 0.5  for closure of 692-739	Size = 1 BP stack across bulge = -3.3
		Stack = -3.4  for stack of 694-738
		Stack = -2.4  for stack of 695-737
		Stack = -3.3  for stack of 696-736
		Stack = -3.3  for stack of 697-735
	Helix total = -12.4
	Internal/bulge = 2.8  for closure of 698-734	Size = 2
		Stack = -2.4  for stack of 699-731
		Stack = -3.3  for stack of 700-730
		Stack = -3.3  for stack of 701-729
		Stack = -3.4  for stack of 702-728
		Stack = -2.4  for stack of 703-727
		Stack = -3.3  for stack of 704-726
		Stack = -2.2  for stack of 705-725
	Helix total = -20.3
	Internal/bulge = 4.5  for closure of 706-724	Size = 5
		Stack = -2.4  for stack of 708-719
		Stack = -3.4  for stack of 709-718
		Stack = -3.3  for stack of 710-717
	Helix total = -9.1
	Hairpin = 3.3  for closure of 711-716
		Stack = -0.6  for stack of 22-652
	Helix total = -0.6
	Internal/bulge = 1.9  for closure of 23-651	Size = 2
		Stack = -1.1  for stack of 25-649
		Stack = -1.3  for stack of 26-648
		Stack = -1.4  for stack of 27-647
		Stack = -1.4  for stack of 28-646
		Stack = -3.4  for stack of 29-645
		Stack = -2.1  for stack of 30-644
	Helix total = -10.7
	Multiloop = 3.6  for closure of 31-643
		Stack = -0.9  for stack of 595-641
		Stack = -2.1  for stack of 596-640
		Stack = -3.3  for stack of 597-639
		Stack = -2.4  for stack of 598-638
		Stack = -2.1  for stack of 599-637
	Helix total = -10.8
	Internal/bulge = 4.6  for closure of 600-636	Size = 7
		Stack = -2.1  for stack of 608-635
		Stack = -2.1  for stack of 609-634
		Stack = -3.3  for stack of 610-633
	Helix total = -7.5
	Internal/bulge = 0.7  for closure of 611-632	Size = 2
	Helix total = 0.0
	Hairpin = 6.9  for closure of 613-630
		Stack = -2.2  for stack of 565-585
	Helix total = -2.2
	Hairpin = 6.9  for closure of 566-584
		Stack = -2.1  for stack of 527-558
		Stack = -0.9  for stack of 528-557
	Helix total = -3.0
	Internal/bulge = 2.3  for closure of 529-556	Size = 1 BP stack across bulge = -1.1
		Stack = -1.3  for stack of 530-554
		Stack = -2.2  for stack of 531-553
		Stack = -2.1  for stack of 532-552
		Stack = -2.1  for stack of 533-551
		Stack = -3.3  for stack of 534-550
	Helix total = -11.0
	Internal/bulge = 1.1  for closure of 535-549	Size = 3
		Stack = -2.1  for stack of 537-546
		Stack = -2.4  for stack of 538-545
	Helix total = -4.5
	Hairpin = 4.2  for closure of 539-544
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 34-521	Size = 2
		Stack = -2.4  for stack of 36-519
	Helix total = -2.4
	Multiloop = 5.5  for closure of 37-518
	Helix total = 0.0
	Internal/bulge = 2.1  for closure of 487-512	Size = 1 BP stack across bulge = -1.3
		Stack = -2.2  for stack of 489-511
		Stack = -3.3  for stack of 490-510
	Helix total = -5.5
	Internal/bulge = 3.0  for closure of 491-509	Size = 4
		Stack = -1.5  for stack of 495-507
		Stack = -3.3  for stack of 496-506
		Stack = -3.3  for stack of 497-505
		Stack = -2.4  for stack of 498-504
	Helix total = -10.5
	Hairpin = 5.4  for closure of 499-503
	Helix total = 0.0
	Internal/bulge = 4.4  for closure of 41-481	Size = 6
		Stack = -3.4  for stack of 47-479
		Stack = -3.3  for stack of 48-478
	Helix total = -6.7
	Internal/bulge = 1.7  for closure of 49-477	Size = 1 BP stack across bulge = -2.1
		Stack = -2.1  for stack of 51-476
		Stack = -3.4  for stack of 52-475
	Helix total = -5.5
	Multiloop = 0.1  for closure of 53-474
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 459-470	Size = 2
		Stack = -2.4  for stack of 461-468
	Helix total = -2.4
	Hairpin = 3.3  for closure of 462-467
		Stack = -3.3  for stack of 436-457
	Helix total = -3.3
	Internal/bulge = 1.2  for closure of 437-456	Size = 2
		Stack = -2.1  for stack of 439-454
		Stack = -3.4  for stack of 440-453
	Helix total = -5.5
	Hairpin = 5.5  for closure of 441-452
		Stack = -2.1  for stack of 96-434
		Stack = -2.4  for stack of 97-433
	Helix total = -4.5
	Multiloop = 2.6  for closure of 98-432
		Stack = -2.4  for stack of 409-431
		Stack = -3.3  for stack of 410-430
		Stack = -1.5  for stack of 411-429
	Helix total = -7.2
	Internal/bulge = 3.7  for closure of 412-428	Size = 3
		Stack = -2.4  for stack of 413-424
		Stack = -0.9  for stack of 414-423
		Stack = -1.4  for stack of 415-422
	Helix total = -4.7
	Hairpin = 5.4  for closure of 416-421
		Stack = -3.3  for stack of 357-405
		Stack = -2.1  for stack of 358-404
	Helix total = -5.4
	Internal/bulge = 4.1  for closure of 359-403	Size = 10
		Stack = -2.2  for stack of 364-396
		Stack = -2.1  for stack of 365-395
	Helix total = -4.3
	Internal/bulge = 4.6  for closure of 366-394	Size = 4
		Stack = -1.1  for stack of 371-393
		Stack = -2.1  for stack of 372-392
		Stack = -3.3  for stack of 373-391
		Stack = -2.2  for stack of 374-390
		Stack = -1.3  for stack of 375-389
		Stack = -2.1  for stack of 376-388
	Helix total = -12.1
	Hairpin = 5.4  for closure of 377-387
		Stack = -2.1  for stack of 106-355
		Stack = -2.1  for stack of 107-354
	Helix total = -4.2
	Internal/bulge = 1.5  for closure of 108-353	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.8  for closure of 110-351	Size = 6
		Stack = -1.3  for stack of 115-348
	Helix total = -1.3
	Internal/bulge = 3.5  for closure of 116-347	Size = 7
		Stack = -2.1  for stack of 121-343
		Stack = -3.3  for stack of 122-342
	Helix total = -5.4
	Multiloop = 7.3  for closure of 123-341
		Stack = -2.4  for stack of 314-336
		Stack = -2.4  for stack of 315-335
		Stack = -3.4  for stack of 316-334
	Helix total = -8.2
	Internal/bulge = 0.5  for closure of 317-333	Size = 1 BP stack across bulge = -3.3
		Stack = -2.4  for stack of 319-332
		Stack = -3.4  for stack of 320-331
		Stack = -3.3  for stack of 321-330
	Helix total = -9.1
	Hairpin = 4.6  for closure of 322-329
		Stack = -0.9  for stack of 219-302
		Stack = -1.3  for stack of 220-301
		Stack = -1.1  for stack of 221-300
		Stack = -2.4  for stack of 222-299
	Helix total = -5.7
	Internal/bulge = 3.2  for closure of 223-298	Size = 15
		Stack = -2.2  for stack of 232-290
		Stack = -3.3  for stack of 233-289
		Stack = -2.1  for stack of 234-288
		Stack = -0.9  for stack of 235-287
	Helix total = -8.5
	Internal/bulge = 3.0  for closure of 236-286	Size = 3
		Stack = -3.3  for stack of 238-283
		Stack = -2.4  for stack of 239-282
	Helix total = -5.7
	Internal/bulge = 1.0  for closure of 240-281	Size = 9
		Stack = -3.4  for stack of 245-275
		Stack = -3.3  for stack of 246-274
		Stack = -3.3  for stack of 247-273
	Helix total = -10.0
	Internal/bulge = 3.0  for closure of 248-272	Size = 3
		Stack = -1.5  for stack of 250-269
		Stack = -2.1  for stack of 251-268
		Stack = -1.5  for stack of 252-267
		Stack = -3.3  for stack of 253-266
		Stack = -2.4  for stack of 254-265
		Stack = -3.3  for stack of 255-264
		Stack = -3.4  for stack of 256-263
	Helix total = -17.5
	Hairpin = 4.6  for closure of 257-262
		Stack = -2.5  for stack of 185-214
		Stack = -2.4  for stack of 186-213
		Stack = -3.4  for stack of 187-212
	Helix total = -8.3
	Internal/bulge = 0.4  for closure of 188-211	Size = 6
		Stack = -3.3  for stack of 192-207
		Stack = -3.3  for stack of 193-206
		Stack = -3.3  for stack of 194-205
		Stack = -3.3  for stack of 195-204
		Stack = -2.1  for stack of 196-203
	Helix total = -15.3
	Hairpin = 5.5  for closure of 197-202
	Helix total = 0.0
	Internal/bulge = 0.8  for closure of 142-177	Size = 2
		Stack = -2.1  for stack of 144-175
	Helix total = -2.1
	Internal/bulge = 2.2  for closure of 145-174	Size = 11
		Stack = -2.1  for stack of 151-167
	Helix total = -2.1
	Internal/bulge = -0.7  for closure of 152-166	Size = 2
		Stack = -1.0  for stack of 154-164
		Stack = -2.1  for stack of 155-163
	Helix total = -3.1
	Hairpin = 4.1  for closure of 156-162
		Stack = -2.5  for stack of 56-89
	Helix total = -2.5
	Internal/bulge = 4.2  for closure of 57-88	Size = 3
		Stack = -2.1  for stack of 61-87
		Stack = -2.2  for stack of 62-86
	Helix total = -4.3
	Hairpin = 6.8  for closure of 63-85
		Stack = -2.1  for stack of 4-20
		Stack = -2.1  for stack of 5-19
		Stack = -3.3  for stack of 6-18
		Stack = -2.5  for stack of 7-17
	Helix total = -10.0
	Hairpin = 5.1  for closure of 8-16


	Total energy = -317.8



