Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:67 49:66 50:65 51:64 52:63 147:181 148:180 149:179
	    150:178 151:177 152:176 196:227 197:226 199:224 200:223 201:222
	    202:221 246:284 247:283 248:282 249:281 250:279 251:278 252:277
	Energy of Broken Structure: -45.4
	Energy of Pseudo-Helices:   -33.7
	Pseudoknot Energy Penalty:  41.7
	Total Free Energy:          -37.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-344
		Stack = -1.5  for stack of 2-343
		Stack = -2.1  for stack of 3-342
		Stack = -3.3  for stack of 4-341
		Stack = -3.4  for stack of 5-340
		Stack = -2.4  for stack of 6-339
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-338
		Stack = -3.4  for stack of 321-337
		Stack = -2.4  for stack of 322-336
		Stack = -3.3  for stack of 323-335
		Stack = -3.3  for stack of 324-334
	Helix total = -12.4
	Hairpin = 4.4  for closure of 325-333
		Stack = -2.4  for stack of 20-317
		Stack = -2.2  for stack of 21-316
		Stack = -1.3  for stack of 22-315
	Helix total = -5.9
	Internal/bulge = 2.6  for closure of 23-314	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 26-311	Size = 2
		Stack = -2.1  for stack of 28-309
	Helix total = -2.1
	Internal/bulge = 3.0  for closure of 29-308	Size = 4
	Helix total = 0.0
	Internal/bulge = 0.3  for closure of 33-306	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 36-303	Size = 3
		Stack = -0.9  for stack of 38-300
	Helix total = -0.9
	Internal/bulge = 3.9  for closure of 39-299	Size = 9
		Stack = -2.1  for stack of 43-292
		Stack = -1.1  for stack of 44-291
		Stack = -2.1  for stack of 45-290
		Stack = -3.4  for stack of 46-289
	Helix total = -8.7
	Multiloop = 6.4  for closure of 47-288
		Stack = -2.5  for stack of 229-265
		Stack = -2.1  for stack of 230-264
	Helix total = -4.6
	Internal/bulge = 4.0  for closure of 231-263	Size = 5
	Helix total = 0.0
	Internal/bulge = 1.5  for closure of 235-260	Size = 2
		Stack = -1.3  for stack of 237-258
	Helix total = -1.3
	Internal/bulge = 3.0  for closure of 238-257	Size = 4
		Stack = -3.3  for stack of 242-255
		Stack = -3.3  for stack of 243-254
	Helix total = -6.6
	Hairpin = 4.1  for closure of 244-253
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 182-216	Size = 2
		Stack = -2.5  for stack of 184-214
		Stack = -3.3  for stack of 185-213
		Stack = -2.1  for stack of 186-212
		Stack = -0.9  for stack of 187-211
		Stack = -0.6  for stack of 188-210
		Stack = -2.5  for stack of 189-209
		Stack = -2.1  for stack of 190-208
		Stack = -1.3  for stack of 191-207
		Stack = -1.1  for stack of 192-206
		Stack = -1.3  for stack of 193-205
		Stack = -1.1  for stack of 194-204
	Helix total = -18.8
	Hairpin = 5.8  for closure of 195-203
		Stack = -3.3  for stack of 133-167
		Stack = -2.4  for stack of 134-166
		Stack = -2.4  for stack of 135-165
		Stack = -1.1  for stack of 136-164
		Stack = -2.1  for stack of 137-163
	Helix total = -11.3
	Internal/bulge = 3.2  for closure of 138-162	Size = 3
		Stack = -2.1  for stack of 139-158
		Stack = -0.9  for stack of 140-157
		Stack = -0.6  for stack of 141-156
	Helix total = -3.6
	Hairpin = 6.4  for closure of 142-155
		Stack = -0.9  for stack of 115-132
		Stack = -1.3  for stack of 116-131
		Stack = -2.1  for stack of 117-130
		Stack = -3.4  for stack of 118-129
		Stack = -2.1  for stack of 119-128
	Helix total = -9.8
	Hairpin = 4.2  for closure of 120-127
		Stack = -2.1  for stack of 54-81
		Stack = -2.2  for stack of 55-80
		Stack = -1.3  for stack of 56-79
		Stack = -2.1  for stack of 57-78
		Stack = -2.2  for stack of 58-77
		Stack = -1.3  for stack of 59-76
	Helix total = -11.2
	Hairpin = 6.6  for closure of 60-75


	Total energy = -45.4



