Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    52:73 54:71 55:70 57:68 174:189 175:188 176:187 177:186
	Energy of Broken Structure: -59.0
	Energy of Pseudo-Helices:   -9.6
	Pseudoknot Energy Penalty:  14.6
	Total Free Energy:          -54.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-285
		Stack = -1.5  for stack of 2-284
		Stack = -2.1  for stack of 3-283
		Stack = -3.3  for stack of 4-282
		Stack = -3.4  for stack of 5-281
		Stack = -2.4  for stack of 6-280
	Helix total = -16.0
	Multiloop = 5.0  for closure of 7-279
		Stack = -3.3  for stack of 262-278
		Stack = -2.4  for stack of 263-277
		Stack = -3.3  for stack of 264-276
		Stack = -3.3  for stack of 265-275
	Helix total = -12.3
	Hairpin = 3.5  for closure of 266-274
		Stack = -2.4  for stack of 20-258
		Stack = -2.4  for stack of 21-257
	Helix total = -4.8
	Internal/bulge = 1.9  for closure of 22-256	Size = 3
		Stack = -3.3  for stack of 24-253
		Stack = -2.2  for stack of 25-252
	Helix total = -5.5
	Internal/bulge = 1.9  for closure of 26-251	Size = 2
		Stack = -1.3  for stack of 28-249
	Helix total = -1.3
	Internal/bulge = 3.1  for closure of 29-248	Size = 7
		Stack = -0.6  for stack of 33-243
		Stack = -2.5  for stack of 34-242
		Stack = -2.4  for stack of 35-241
	Helix total = -5.5
	Internal/bulge = 1.0  for closure of 36-240	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 39-237	Size = 2
	Helix total = 0.0
	Internal/bulge = 4.2  for closure of 41-235	Size = 3
		Stack = -0.9  for stack of 42-231
		Stack = -2.1  for stack of 43-230
		Stack = -2.2  for stack of 44-229
		Stack = -1.3  for stack of 45-228
	Helix total = -6.5
	Multiloop = 3.4  for closure of 46-227
		Stack = -3.4  for stack of 210-223
		Stack = -2.1  for stack of 211-222
		Stack = -2.1  for stack of 212-221
		Stack = -3.4  for stack of 213-220
	Helix total = -11.0
	Hairpin = 3.3  for closure of 214-219
		Stack = -3.3  for stack of 180-205
		Stack = -2.4  for stack of 181-204
		Stack = -2.1  for stack of 182-203
		Stack = -3.3  for stack of 183-202
		Stack = -2.2  for stack of 184-201
	Helix total = -13.3
	Hairpin = 6.4  for closure of 185-200
		Stack = -3.3  for stack of 150-171
		Stack = -2.1  for stack of 151-170
		Stack = -1.3  for stack of 152-169
		Stack = -2.1  for stack of 153-168
		Stack = -2.4  for stack of 154-167
		Stack = -0.6  for stack of 155-166
	Helix total = -11.8
	Internal/bulge = 1.9  for closure of 156-165	Size = 3
	Helix total = 0.0
	Hairpin = 5.4  for closure of 158-162
	Helix total = 0.0
	Internal/bulge = -0.3  for closure of 102-142	Size = 4
		Stack = -0.6  for stack of 105-139
	Helix total = -0.6
	Internal/bulge = 1.9  for closure of 106-138	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.7  for closure of 108-136	Size = 1 BP stack across bulge = -2.1
		Stack = -2.2  for stack of 110-135
		Stack = -2.4  for stack of 111-134
	Helix total = -4.6
	Internal/bulge = -0.1  for closure of 112-133	Size = 2
		Stack = -1.4  for stack of 114-131
		Stack = -2.5  for stack of 115-130
		Stack = -2.1  for stack of 116-129
		Stack = -1.4  for stack of 117-128
		Stack = -3.4  for stack of 118-127
	Helix total = -10.8
	Hairpin = 3.3  for closure of 119-126
		Stack = -2.4  for stack of 47-62
		Stack = -3.3  for stack of 48-61
		Stack = -2.2  for stack of 49-60
	Helix total = -7.9
	Hairpin = 5.2  for closure of 50-59


	Total energy = -59.0



