Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:67 49:66 50:65 51:64 52:63 154:187 155:186 156:185
	    157:184 158:183 159:182 203:237 204:236 206:234 208:232 254:291
	    255:290 256:289 257:288 258:286 259:285 260:284
	Energy of Broken Structure: -53.9
	Energy of Pseudo-Helices:   -28.8
	Pseudoknot Energy Penalty:  31.7
	Total Free Energy:          -51.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-351
		Stack = -1.5  for stack of 2-350
		Stack = -2.1  for stack of 3-349
		Stack = -3.3  for stack of 4-348
		Stack = -3.4  for stack of 5-347
		Stack = -2.4  for stack of 6-346
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-345
		Stack = -3.4  for stack of 328-344
		Stack = -2.4  for stack of 329-343
		Stack = -3.3  for stack of 330-342
		Stack = -3.3  for stack of 331-341
	Helix total = -12.4
	Hairpin = 4.4  for closure of 332-340
		Stack = -2.1  for stack of 20-324
	Helix total = -2.1
	Internal/bulge = 1.2  for closure of 21-323	Size = 2
		Stack = -2.1  for stack of 23-321
		Stack = -2.1  for stack of 24-320
	Helix total = -4.2
	Internal/bulge = 2.9  for closure of 25-319	Size = 14
		Stack = -3.3  for stack of 33-311
	Helix total = -3.3
	Internal/bulge = 1.5  for closure of 34-310	Size = 3
		Stack = -2.1  for stack of 37-308
		Stack = -0.9  for stack of 38-307
		Stack = -2.1  for stack of 39-306
	Helix total = -5.1
	Internal/bulge = 3.3  for closure of 40-305	Size = 7
		Stack = -2.1  for stack of 43-299
		Stack = -1.1  for stack of 44-298
		Stack = -2.1  for stack of 45-297
		Stack = -2.2  for stack of 46-296
	Helix total = -7.5
	Multiloop = 6.7  for closure of 47-295
		Stack = -0.6  for stack of 241-271
		Stack = -0.9  for stack of 242-270
		Stack = -0.9  for stack of 243-269
		Stack = -0.9  for stack of 244-268
	Helix total = -3.3
	Internal/bulge = 1.7  for closure of 245-267	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.6  for closure of 248-264	Size = 1 BP stack across bulge = -2.2
		Stack = -3.3  for stack of 250-263
		Stack = -3.3  for stack of 251-262
	Helix total = -6.6
	Hairpin = 4.1  for closure of 252-261
		Stack = -1.5  for stack of 193-219
		Stack = -1.3  for stack of 194-218
		Stack = -0.9  for stack of 195-217
		Stack = -1.1  for stack of 196-216
		Stack = -0.9  for stack of 197-215
		Stack = -2.1  for stack of 198-214
		Stack = -2.2  for stack of 199-213
		Stack = -1.3  for stack of 200-212
	Helix total = -11.3
	Hairpin = 6.4  for closure of 201-211
		Stack = -2.1  for stack of 137-174
		Stack = -2.1  for stack of 138-173
		Stack = -2.2  for stack of 139-172
		Stack = -2.4  for stack of 140-171
	Helix total = -8.8
	Internal/bulge = 1.2  for closure of 141-170	Size = 2
		Stack = -0.9  for stack of 143-168
		Stack = -2.1  for stack of 144-167
		Stack = -3.3  for stack of 145-166
	Helix total = -6.3
	Internal/bulge = 2.6  for closure of 146-165	Size = 6
		Stack = -2.5  for stack of 151-162
		Stack = -1.4  for stack of 152-161
	Helix total = -3.9
	Hairpin = 4.3  for closure of 153-160
		Stack = -0.9  for stack of 117-136
		Stack = -1.3  for stack of 118-135
		Stack = -2.1  for stack of 119-134
		Stack = -3.4  for stack of 120-133
		Stack = -3.3  for stack of 121-132
		Stack = -1.4  for stack of 122-131
	Helix total = -12.4
	Hairpin = 5.2  for closure of 123-130
		Stack = -2.1  for stack of 54-80
		Stack = -2.5  for stack of 55-79
		Stack = -1.0  for stack of 56-78
		Stack = -0.6  for stack of 57-77
		Stack = -1.4  for stack of 58-76
	Helix total = -7.6
	Hairpin = 6.4  for closure of 59-75


	Total energy = -53.9



