Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    56:76 57:75 58:74 60:72 152:187 153:186 154:185 155:184
	    156:183 157:182 203:235 204:234 205:233 206:232 207:231 208:230
	    253:290 254:289 255:288 256:287 257:286 258:285 259:284
	Energy of Broken Structure: -99.6
	Energy of Pseudo-Helices:   -39.9
	Pseudoknot Energy Penalty:  32.2
	Total Free Energy:          -107.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-352
		Stack = -1.5  for stack of 2-351
		Stack = -2.1  for stack of 3-350
		Stack = -3.3  for stack of 4-349
		Stack = -3.4  for stack of 5-348
		Stack = -2.4  for stack of 6-347
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-346
		Stack = -3.4  for stack of 329-345
		Stack = -2.4  for stack of 330-344
		Stack = -3.3  for stack of 331-343
		Stack = -3.3  for stack of 332-342
	Helix total = -12.4
	Hairpin = 4.4  for closure of 333-341
		Stack = -2.4  for stack of 20-325
		Stack = -1.5  for stack of 21-324
		Stack = -2.1  for stack of 22-323
		Stack = -2.4  for stack of 23-322
	Helix total = -8.4
	Internal/bulge = 0.1  for closure of 24-321	Size = 4
	Helix total = 0.0
	Internal/bulge = 3.0  for closure of 27-318	Size = 3
		Stack = -1.5  for stack of 30-316
		Stack = -2.4  for stack of 31-315
		Stack = -2.5  for stack of 32-314
		Stack = -0.5  for stack of 33-313
		Stack = 0.3  for stack of 34-312
		Stack = -1.4  for stack of 35-311
	Helix total = -8.0
	Internal/bulge = 1.1  for closure of 36-310	Size = 1 BP stack across bulge = -2.1
		Stack = -1.5  for stack of 38-309
		Stack = -1.3  for stack of 39-308
		Stack = -0.9  for stack of 40-307
		Stack = -0.6  for stack of 41-306
		Stack = -2.1  for stack of 42-305
	Helix total = -6.4
	Internal/bulge = 3.6  for closure of 43-304	Size = 4
		Stack = -2.4  for stack of 44-299
		Stack = -2.2  for stack of 45-298
		Stack = -2.1  for stack of 46-297
		Stack = -3.4  for stack of 47-296
	Helix total = -10.1
	Multiloop = 0.7  for closure of 48-295
		Stack = -3.3  for stack of 239-271
		Stack = -2.4  for stack of 240-270
		Stack = -2.4  for stack of 241-269
		Stack = -2.2  for stack of 242-268
		Stack = -3.3  for stack of 243-267
		Stack = -2.4  for stack of 244-266
		Stack = -3.3  for stack of 245-265
	Helix total = -19.3
	Hairpin = 6.0  for closure of 246-264
		Stack = -3.3  for stack of 190-220
		Stack = -3.4  for stack of 191-219
	Helix total = -6.7
	Internal/bulge = 1.3  for closure of 192-218	Size = 8
		Stack = -2.4  for stack of 197-213
		Stack = -3.4  for stack of 198-212
		Stack = -2.1  for stack of 199-211
		Stack = -1.3  for stack of 200-210
	Helix total = -9.2
	Hairpin = 5.8  for closure of 201-209
		Stack = -2.4  for stack of 136-174
		Stack = -3.4  for stack of 137-173
		Stack = -2.1  for stack of 138-172
		Stack = -1.4  for stack of 139-171
	Helix total = -9.3
	Internal/bulge = 2.3  for closure of 140-170	Size = 4
		Stack = -3.3  for stack of 142-166
		Stack = -2.5  for stack of 143-165
		Stack = -1.5  for stack of 144-164
		Stack = -2.1  for stack of 145-163
		Stack = -2.4  for stack of 146-162
		Stack = -2.1  for stack of 147-161
		Stack = 0.3  for stack of 148-160
		Stack = -2.1  for stack of 149-159
	Helix total = -15.7
	Hairpin = 5.5  for closure of 150-158
		Stack = -3.4  for stack of 114-135
		Stack = -2.1  for stack of 115-134
		Stack = -1.0  for stack of 116-133
		Stack = -2.5  for stack of 117-132
		Stack = -3.3  for stack of 118-131
		Stack = -2.1  for stack of 119-130
		Stack = -1.3  for stack of 120-129
		Stack = -0.9  for stack of 121-128
	Helix total = -16.6
	Hairpin = 5.5  for closure of 122-127
		Stack = -2.4  for stack of 49-65
		Stack = -3.3  for stack of 50-64
		Stack = -3.3  for stack of 51-63
	Helix total = -9.0
	Hairpin = 4.8  for closure of 52-62


	Total energy = -99.6



