Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:70 50:69 51:68 52:67 53:66 161:193 162:192 163:191
	    164:190 165:189 210:238 211:237 212:236 214:234 215:233 216:232
	    263:299 264:298 265:297 266:296 267:295 268:294
	Energy of Broken Structure: -53.8
	Energy of Pseudo-Helices:   -38.5
	Pseudoknot Energy Penalty:  34.4
	Total Free Energy:          -57.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-361
		Stack = -1.5  for stack of 2-360
		Stack = -2.1  for stack of 3-359
		Stack = -3.4  for stack of 4-358
		Stack = -2.1  for stack of 5-357
		Stack = -1.4  for stack of 6-356
	Helix total = -13.8
	Multiloop = 5.0  for closure of 7-355
		Stack = -3.3  for stack of 338-354
		Stack = -3.3  for stack of 339-353
		Stack = -3.3  for stack of 340-352
		Stack = -3.3  for stack of 341-351
	Helix total = -13.2
	Hairpin = 4.4  for closure of 342-350
		Stack = -2.1  for stack of 19-334
		Stack = -2.1  for stack of 20-333
		Stack = -2.5  for stack of 21-332
	Helix total = -6.7
	Internal/bulge = 1.9  for closure of 22-331	Size = 2
		Stack = -1.3  for stack of 24-329
		Stack = -0.6  for stack of 25-328
	Helix total = -1.9
	Internal/bulge = 1.7  for closure of 26-327	Size = 1 BP stack across bulge = -2.1
		Stack = -2.5  for stack of 28-326
	Helix total = -2.5
	Internal/bulge = 3.3  for closure of 29-325	Size = 1 BP stack across bulge = -0.5
		Stack = -1.5  for stack of 31-324
		Stack = -2.1  for stack of 32-323
		Stack = -1.4  for stack of 33-322
		Stack = 0.3  for stack of 34-321
		Stack = -1.4  for stack of 35-320
		Stack = -2.4  for stack of 36-319
		Stack = -2.1  for stack of 37-318
		Stack = -2.1  for stack of 38-317
		Stack = -2.5  for stack of 39-316
	Helix total = -15.2
	Internal/bulge = 4.9  for closure of 40-315	Size = 9
		Stack = -2.1  for stack of 44-308
		Stack = -1.1  for stack of 45-307
		Stack = -2.1  for stack of 46-306
		Stack = -3.4  for stack of 47-305
	Helix total = -8.7
	Multiloop = 7.4  for closure of 48-304
		Stack = -2.1  for stack of 247-283
		Stack = -2.4  for stack of 248-282
		Stack = -1.1  for stack of 249-281
		Stack = -2.1  for stack of 250-280
		Stack = -2.5  for stack of 251-279
		Stack = -1.5  for stack of 252-278
		Stack = -2.1  for stack of 253-277
		Stack = -1.1  for stack of 254-276
		Stack = -2.4  for stack of 255-275
	Helix total = -17.3
	Internal/bulge = 1.4  for closure of 256-274	Size = 4
		Stack = -2.2  for stack of 259-271
	Helix total = -2.2
	Hairpin = 5.5  for closure of 260-270
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 196-225	Size = 2
		Stack = -3.3  for stack of 198-223
		Stack = -2.2  for stack of 199-222
		Stack = -1.3  for stack of 200-221
	Helix total = -6.8
	Internal/bulge = 1.9  for closure of 201-220	Size = 4
	Helix total = 0.0
	Hairpin = 6.2  for closure of 204-217
		Stack = -2.5  for stack of 144-182
		Stack = -3.3  for stack of 145-181
	Helix total = -5.8
	Internal/bulge = 4.4  for closure of 146-180	Size = 10
		Stack = -1.0  for stack of 151-173
	Helix total = -1.0
	Internal/bulge = 2.9  for closure of 152-172	Size = 5
		Stack = -2.1  for stack of 156-169
		Stack = -1.5  for stack of 157-168
	Helix total = -3.6
	Hairpin = 4.5  for closure of 158-167
		Stack = -2.5  for stack of 113-143
		Stack = -2.4  for stack of 114-142
		Stack = -2.5  for stack of 115-141
		Stack = -0.6  for stack of 116-140
		Stack = -1.0  for stack of 117-139
		Stack = -0.5  for stack of 118-138
	Helix total = -9.5
	Internal/bulge = 2.4  for closure of 119-137	Size = 1 BP stack across bulge = -1.4
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 121-136	Size = 2
		Stack = -3.3  for stack of 123-134
		Stack = -2.1  for stack of 124-133
	Helix total = -5.4
	Hairpin = 4.9  for closure of 125-132
		Stack = -1.4  for stack of 56-87
		Stack = -3.3  for stack of 57-86
		Stack = -2.2  for stack of 58-85
		Stack = -1.0  for stack of 59-84
		Stack = -0.5  for stack of 60-83
		Stack = -1.4  for stack of 61-82
	Helix total = -9.8
	Hairpin = 6.9  for closure of 62-81


	Total energy = -53.8



