Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    505:526 506:525 507:524
	Energy of Broken Structure: -141.9
	Energy of Pseudo-Helices:   -6.7
	Pseudoknot Energy Penalty:  6.9
	Total Free Energy:          -141.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.7
		Stack = -2.4  for stack of 27-556
		Stack = -1.1  for stack of 28-555
		Stack = -0.9  for stack of 29-554
	Helix total = -4.4
	Internal/bulge = 2.5  for closure of 30-553	Size = 1 BP stack across bulge = -1.3
		Stack = -0.9  for stack of 32-552
		Stack = -2.2  for stack of 33-551
		Stack = -2.4  for stack of 34-550
		Stack = -3.4  for stack of 35-549
		Stack = -2.1  for stack of 36-548
	Helix total = -11.0
	Multiloop = -0.6  for closure of 37-547
		Stack = -3.4  for stack of 500-545
		Stack = -2.1  for stack of 501-544
		Stack = -2.2  for stack of 502-543
		Stack = -3.3  for stack of 503-542
	Helix total = -11.0
	Internal/bulge = 4.4  for closure of 504-541	Size = 6
		Stack = -2.1  for stack of 511-540
		Stack = -2.4  for stack of 512-539
		Stack = -3.3  for stack of 513-538
		Stack = -2.4  for stack of 514-537
	Helix total = -10.2
	Hairpin = 6.1  for closure of 515-536
	Helix total = 0.0
	Internal/bulge = 3.8  for closure of 440-497	Size = 5
		Stack = -3.4  for stack of 442-492
		Stack = -2.4  for stack of 443-491
		Stack = -3.3  for stack of 444-490
		Stack = -3.3  for stack of 445-489
	Helix total = -12.4
	Internal/bulge = 0.7  for closure of 446-488	Size = 7
	Helix total = 0.0
	Internal/bulge = 2.2  for closure of 450-483	Size = 9
		Stack = -2.4  for stack of 455-477
		Stack = -2.1  for stack of 456-476
		Stack = -2.5  for stack of 457-475
		Stack = -1.0  for stack of 458-474
		Stack = -0.9  for stack of 459-473
		Stack = -0.9  for stack of 460-472
		Stack = -2.1  for stack of 461-471
	Helix total = -11.9
	Hairpin = 5.0  for closure of 462-470
		Stack = -2.2  for stack of 406-436
		Stack = -1.3  for stack of 407-435
		Stack = -1.4  for stack of 408-434
	Helix total = -4.9
	Internal/bulge = 3.8  for closure of 409-433	Size = 13
		Stack = -2.5  for stack of 417-426
		Stack = -3.3  for stack of 418-425
	Helix total = -5.8
	Hairpin = 3.7  for closure of 419-424
		Stack = -3.4  for stack of 39-403
		Stack = -2.4  for stack of 40-402
		Stack = -3.3  for stack of 41-401
		Stack = -3.4  for stack of 42-400
		Stack = -2.1  for stack of 43-399
	Helix total = -14.6
	Internal/bulge = 1.7  for closure of 44-398	Size = 1 BP stack across bulge = -2.1
		Stack = -3.3  for stack of 45-396
	Helix total = -3.3
	Multiloop = 5.5  for closure of 46-395
	Helix total = 0.0
	Internal/bulge = 1.3  for closure of 367-393	Size = 1 BP stack across bulge = -2.1
		Stack = -3.4  for stack of 369-392
		Stack = -2.1  for stack of 370-391
	Helix total = -5.5
	Internal/bulge = 4.6  for closure of 371-390	Size = 6
		Stack = -2.1  for stack of 376-387
		Stack = -3.3  for stack of 377-386
		Stack = -3.4  for stack of 378-385
	Helix total = -8.8
	Hairpin = 3.3  for closure of 379-384
	Helix total = 0.0
	Internal/bulge = 3.8  for closure of 47-361	Size = 5
		Stack = -2.1  for stack of 52-359
		Stack = -2.2  for stack of 53-358
	Helix total = -4.3
	Internal/bulge = 1.7  for closure of 54-357	Size = 1 BP stack across bulge = -2.1
		Stack = -2.1  for stack of 56-356
		Stack = -3.4  for stack of 57-355
	Helix total = -5.5
	Multiloop = -0.3  for closure of 58-354
		Stack = -2.1  for stack of 339-350
		Stack = -2.4  for stack of 340-349
		Stack = -3.3  for stack of 341-348
	Helix total = -7.8
	Hairpin = 2.8  for closure of 342-347
		Stack = -2.1  for stack of 316-337
		Stack = -2.1  for stack of 317-336
		Stack = -3.3  for stack of 318-335
		Stack = -2.4  for stack of 319-334
	Helix total = -9.9
	Hairpin = 6.4  for closure of 320-333
		Stack = -2.2  for stack of 113-314
		Stack = -2.1  for stack of 114-313
	Helix total = -4.3
	Multiloop = 4.5  for closure of 115-312
		Stack = -3.4  for stack of 289-311
		Stack = -2.1  for stack of 290-310
		Stack = -2.1  for stack of 291-309
	Helix total = -7.6
	Internal/bulge = 3.7  for closure of 292-308	Size = 3
		Stack = -1.4  for stack of 293-304
		Stack = -2.4  for stack of 294-303
		Stack = -2.1  for stack of 295-302
	Helix total = -5.9
	Hairpin = 4.7  for closure of 296-301
		Stack = -3.3  for stack of 240-286
		Stack = -3.3  for stack of 241-285
	Helix total = -6.6
	Internal/bulge = 2.7  for closure of 242-284	Size = 10
		Stack = -3.4  for stack of 247-277
		Stack = -2.1  for stack of 248-276
	Helix total = -5.5
	Internal/bulge = 3.8  for closure of 249-275	Size = 2
		Stack = -1.3  for stack of 252-274
		Stack = -2.1  for stack of 253-273
		Stack = -3.3  for stack of 254-272
		Stack = -2.2  for stack of 255-271
		Stack = -2.1  for stack of 256-270
		Stack = -1.5  for stack of 257-269
		Stack = -2.1  for stack of 258-268
	Helix total = -14.6
	Hairpin = 3.8  for closure of 259-267
		Stack = -1.4  for stack of 122-239
		Stack = -2.4  for stack of 123-238
		Stack = -2.1  for stack of 124-237
		Stack = -2.1  for stack of 125-236
		Stack = -3.3  for stack of 126-235
		Stack = -3.3  for stack of 127-234
	Helix total = -14.6
	Internal/bulge = 1.9  for closure of 128-233	Size = 3
		Stack = -2.2  for stack of 131-231
	Helix total = -2.2
	Internal/bulge = 2.3  for closure of 132-230	Size = 5
		Stack = -2.1  for stack of 136-227
		Stack = -1.4  for stack of 137-226
		Stack = -2.4  for stack of 138-225
		Stack = -1.1  for stack of 139-224
		Stack = -2.1  for stack of 140-223
		Stack = -3.3  for stack of 141-222
	Helix total = -12.4
	Multiloop = 3.3  for closure of 142-221
		Stack = -1.3  for stack of 198-219
		Stack = -2.1  for stack of 199-218
		Stack = -1.5  for stack of 200-217
		Stack = -2.1  for stack of 201-216
		Stack = -3.3  for stack of 202-215
	Helix total = -10.3
	Internal/bulge = 2.8  for closure of 203-214	Size = 2
		Stack = -3.3  for stack of 206-213
	Helix total = -3.3
	Hairpin = 3.7  for closure of 207-212
		Stack = -2.2  for stack of 184-193
		Stack = -2.4  for stack of 185-192
	Helix total = -4.6
	Hairpin = 3.3  for closure of 186-191
	Helix total = 0.0
	Internal/bulge = -2.2  for closure of 144-178	Size = 2
		Stack = -3.3  for stack of 146-176
	Helix total = -3.3
	Internal/bulge = 2.2  for closure of 147-175	Size = 11
		Stack = -2.1  for stack of 153-168
		Stack = -1.3  for stack of 154-167
		Stack = -2.2  for stack of 155-166
		Stack = -2.1  for stack of 156-165
		Stack = -1.4  for stack of 157-164
	Helix total = -9.1
	Hairpin = 3.1  for closure of 158-163
		Stack = -2.5  for stack of 61-106
		Stack = -1.5  for stack of 62-105
	Helix total = -4.0
	Internal/bulge = 3.3  for closure of 63-104	Size = 2
		Stack = -2.2  for stack of 66-103
	Helix total = -2.2
	Internal/bulge = 1.1  for closure of 67-102	Size = 3
		Stack = -2.2  for stack of 69-99
	Helix total = -2.2
	Internal/bulge = 3.3  for closure of 70-98	Size = 2
		Stack = -2.1  for stack of 73-97
		Stack = -2.1  for stack of 74-96
	Helix total = -4.2
	Internal/bulge = 2.3  for closure of 75-95	Size = 1 BP stack across bulge = -1.5
		Stack = -1.3  for stack of 76-93
		Stack = -0.9  for stack of 77-92
		Stack = -2.1  for stack of 78-91
		Stack = -2.4  for stack of 79-90
		Stack = -0.9  for stack of 80-89
		Stack = -2.1  for stack of 81-88
	Helix total = -9.7
	Hairpin = 4.5  for closure of 82-87
		Stack = -2.4  for stack of 9-25
		Stack = -2.1  for stack of 10-24
		Stack = -2.5  for stack of 11-23
	Helix total = -7.0
	Hairpin = 6.2  for closure of 12-22


	Total energy = -141.9



