Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    45:171 46:170 47:169 48:168 49:167
	Energy of Broken Structure: -21.6
	Energy of Pseudo-Helices:   -8.7
	Pseudoknot Energy Penalty:  7.4
	Total Free Energy:          -22.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.5
		Stack = -0.9  for stack of 203-244
	Helix total = -0.9
	Internal/bulge = 1.9  for closure of 204-243	Size = 2
		Stack = -1.3  for stack of 206-241
		Stack = -2.2  for stack of 207-240
	Helix total = -3.5
	Multiloop = 5.4  for closure of 208-239
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 224-237	Size = 2
		Stack = -0.9  for stack of 226-235
	Helix total = -0.9
	Hairpin = 4.2  for closure of 227-234
		Stack = -2.1  for stack of 210-223
		Stack = -2.2  for stack of 211-222
		Stack = -2.4  for stack of 212-221
		Stack = -2.1  for stack of 213-220
	Helix total = -8.8
	Hairpin = 5.1  for closure of 214-219
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 157-200	Size = 1 BP stack across bulge = -3.3
		Stack = -2.4  for stack of 159-199
		Stack = -2.2  for stack of 160-198
		Stack = -2.1  for stack of 161-197
		Stack = -2.4  for stack of 162-196
	Helix total = -9.1
	Internal/bulge = 5.4  for closure of 163-195	Size = 15
		Stack = -1.0  for stack of 173-188
		Stack = -1.4  for stack of 174-187
		Stack = -1.3  for stack of 175-186
		Stack = -1.5  for stack of 176-185
		Stack = -2.1  for stack of 177-184
	Helix total = -7.3
	Hairpin = 5.6  for closure of 178-183
		Stack = -2.5  for stack of 91-153
	Helix total = -2.5
	Internal/bulge = 3.3  for closure of 92-152	Size = 5
		Stack = -1.1  for stack of 96-149
		Stack = -2.4  for stack of 97-148
		Stack = -3.3  for stack of 98-147
	Helix total = -6.8
	Internal/bulge = 0.2  for closure of 99-146	Size = 1 BP stack across bulge = -2.1
		Stack = -0.9  for stack of 101-145
		Stack = -0.9  for stack of 102-144
		Stack = -0.9  for stack of 103-143
		Stack = -1.3  for stack of 104-142
		Stack = -0.5  for stack of 105-141
	Helix total = -4.5
	Internal/bulge = 3.2  for closure of 106-140	Size = 19
		Stack = -1.0  for stack of 117-130
		Stack = -2.1  for stack of 118-129
		Stack = -2.2  for stack of 119-128
		Stack = -0.9  for stack of 120-127
	Helix total = -6.2
	Hairpin = 5.4  for closure of 121-126
		Stack = -2.4  for stack of 54-90
		Stack = -2.1  for stack of 55-89
		Stack = -2.1  for stack of 56-88
	Helix total = -6.6
	Internal/bulge = 1.2  for closure of 57-87	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.7  for closure of 59-85	Size = 6
		Stack = -3.3  for stack of 63-81
		Stack = -3.3  for stack of 64-80
	Helix total = -6.6
	Hairpin = 4.7  for closure of 65-79
		Stack = -2.1  for stack of 17-38
		Stack = -0.9  for stack of 18-37
		Stack = -1.0  for stack of 19-36
		Stack = -2.1  for stack of 20-35
		Stack = -2.5  for stack of 21-34
		Stack = -1.0  for stack of 22-33
	Helix total = -9.6
	Internal/bulge = 1.2  for closure of 23-32	Size = 2
	Helix total = 0.0
	Hairpin = 3.1  for closure of 25-30
		Stack = -2.1  for stack of 1-15
		Stack = -1.3  for stack of 2-14
		Stack = 0.3  for stack of 3-13
		Stack = -1.3  for stack of 4-12
	Helix total = -4.4
	Hairpin = 5.6  for closure of 5-11


	Total energy = -21.6



