Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    54:78 55:77 56:76 57:75 58:74 175:214 176:213 177:212
	    178:211 179:210 232:261 233:260 234:259 235:258 280:317 281:316
	    282:315 283:314 284:312 285:311 286:310
	Energy of Broken Structure: -67.5
	Energy of Pseudo-Helices:   -38.2
	Pseudoknot Energy Penalty:  31.5
	Total Free Energy:          -74.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-377
		Stack = -1.5  for stack of 2-376
		Stack = -2.1  for stack of 3-375
		Stack = -3.4  for stack of 4-374
		Stack = -2.1  for stack of 5-373
		Stack = -2.1  for stack of 6-372
	Helix total = -14.5
	Multiloop = 5.2  for closure of 7-371
		Stack = -3.3  for stack of 354-370
		Stack = -3.3  for stack of 355-369
		Stack = -3.3  for stack of 356-368
		Stack = -3.3  for stack of 357-367
	Helix total = -13.2
	Hairpin = 4.4  for closure of 358-366
		Stack = -2.4  for stack of 21-350
		Stack = -1.5  for stack of 22-349
		Stack = -0.5  for stack of 23-348
		Stack = -1.3  for stack of 24-347
		Stack = -1.1  for stack of 25-346
		Stack = -0.9  for stack of 26-345
	Helix total = -7.7
	Internal/bulge = 3.5  for closure of 27-344	Size = 13
		Stack = -3.3  for stack of 35-337
	Helix total = -3.3
	Internal/bulge = 1.0  for closure of 36-336	Size = 6
		Stack = -3.3  for stack of 40-332
		Stack = -2.5  for stack of 41-331
		Stack = 0.3  for stack of 42-330
	Helix total = -5.5
	Internal/bulge = 3.7  for closure of 43-329	Size = 3
		Stack = -2.1  for stack of 44-325
		Stack = -1.1  for stack of 45-324
		Stack = -2.1  for stack of 46-323
		Stack = -3.4  for stack of 47-322
	Helix total = -8.7
	Multiloop = 1.5  for closure of 48-321
		Stack = -2.5  for stack of 265-300
		Stack = -0.5  for stack of 266-299
	Helix total = -3.0
	Internal/bulge = 1.2  for closure of 267-298	Size = 2
		Stack = -2.2  for stack of 269-296
		Stack = -0.9  for stack of 270-295
		Stack = -1.3  for stack of 271-294
		Stack = -2.1  for stack of 272-293
		Stack = -2.5  for stack of 273-292
	Helix total = -9.0
	Internal/bulge = 1.2  for closure of 274-291	Size = 2
		Stack = -3.4  for stack of 276-289
		Stack = -2.4  for stack of 277-288
	Helix total = -5.8
	Hairpin = 4.5  for closure of 278-287
		Stack = -2.4  for stack of 219-246
		Stack = -2.5  for stack of 220-245
	Helix total = -4.9
	Internal/bulge = 1.7  for closure of 221-244	Size = 6
		Stack = -2.1  for stack of 225-240
		Stack = -2.2  for stack of 226-239
		Stack = -3.3  for stack of 227-238
		Stack = -2.1  for stack of 228-237
	Helix total = -9.7
	Hairpin = 5.2  for closure of 229-236
		Stack = -3.3  for stack of 156-199
		Stack = -2.1  for stack of 157-198
		Stack = -2.4  for stack of 158-197
		Stack = -2.1  for stack of 159-196
		Stack = -2.4  for stack of 160-195
		Stack = -2.1  for stack of 161-194
	Helix total = -14.4
	Internal/bulge = 4.1  for closure of 162-193	Size = 4
		Stack = -3.3  for stack of 163-188
		Stack = -3.3  for stack of 164-187
		Stack = -2.1  for stack of 165-186
	Helix total = -8.7
	Internal/bulge = 0.7  for closure of 166-185	Size = 4
		Stack = -3.3  for stack of 169-182
		Stack = -2.1  for stack of 170-181
	Helix total = -5.4
	Hairpin = 5.5  for closure of 171-180
	Helix total = 0.0
	Internal/bulge = 2.0  for closure of 111-154	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.7  for closure of 114-151	Size = 4
		Stack = 0.3  for stack of 117-148
	Helix total = 0.3
	Internal/bulge = 1.9  for closure of 118-147	Size = 2
		Stack = -0.9  for stack of 120-145
		Stack = -0.9  for stack of 121-144
	Helix total = -1.8
	Internal/bulge = 2.6  for closure of 122-143	Size = 6
		Stack = -2.1  for stack of 126-139
	Helix total = -2.1
	Hairpin = 5.8  for closure of 127-138
		Stack = -2.4  for stack of 49-66
		Stack = -2.4  for stack of 50-65
		Stack = -2.1  for stack of 51-64
		Stack = -3.3  for stack of 52-63
	Helix total = -10.2
	Hairpin = 4.4  for closure of 53-62


	Total energy = -67.5



