Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    206:261 208:260 209:259 210:258 211:257 212:256
	Energy of Broken Structure: -25.5
	Energy of Pseudo-Helices:   -8.0
	Pseudoknot Energy Penalty:  7.6
	Total Free Energy:          -25.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = 0.0
		Stack = -0.9  for stack of 262-350
	Helix total = -0.9
	Multiloop = 8.8  for closure of 263-349
		Stack = -1.3  for stack of 296-333
		Stack = -1.1  for stack of 297-332
		Stack = -0.9  for stack of 298-331
		Stack = -1.3  for stack of 299-330
		Stack = -1.1  for stack of 300-329
		Stack = -1.3  for stack of 301-328
		Stack = -0.9  for stack of 302-327
		Stack = -1.1  for stack of 303-326
		Stack = -0.9  for stack of 304-325
		Stack = -0.9  for stack of 305-324
	Helix total = -10.8
	Hairpin = 6.5  for closure of 306-323
		Stack = -1.5  for stack of 264-283
		Stack = -1.4  for stack of 265-282
		Stack = -1.3  for stack of 266-281
		Stack = -1.1  for stack of 267-280
		Stack = -1.3  for stack of 268-279
		Stack = -1.1  for stack of 269-278
		Stack = -1.3  for stack of 270-277
	Helix total = -9.0
	Hairpin = 4.4  for closure of 271-276
		Stack = -1.3  for stack of 222-249
		Stack = -2.1  for stack of 223-248
		Stack = -2.2  for stack of 224-247
		Stack = -1.3  for stack of 225-246
		Stack = -1.1  for stack of 226-245
		Stack = -0.9  for stack of 227-244
		Stack = -0.9  for stack of 228-243
	Helix total = -9.8
	Hairpin = 5.8  for closure of 229-242
		Stack = -0.9  for stack of 39-221
		Stack = -0.9  for stack of 40-220
		Stack = -2.4  for stack of 41-219
		Stack = -2.1  for stack of 42-218
		Stack = -2.2  for stack of 43-217
	Helix total = -8.5
	Multiloop = 7.1  for closure of 44-216
		Stack = -3.3  for stack of 145-202
	Helix total = -3.3
	Internal/bulge = 1.0  for closure of 146-201	Size = 6
		Stack = -3.3  for stack of 150-197
		Stack = -2.1  for stack of 151-196
		Stack = -0.9  for stack of 152-195
		Stack = -0.9  for stack of 153-194
	Helix total = -7.2
	Internal/bulge = 5.2  for closure of 154-193	Size = 5
		Stack = -1.1  for stack of 156-188
		Stack = -1.3  for stack of 157-187
		Stack = -1.1  for stack of 158-186
		Stack = -0.9  for stack of 159-185
		Stack = -0.9  for stack of 160-184
		Stack = -1.3  for stack of 161-183
	Helix total = -6.6
	Hairpin = 6.7  for closure of 162-182
		Stack = -2.1  for stack of 49-144
		Stack = -3.4  for stack of 50-143
		Stack = -2.1  for stack of 51-142
		Stack = -2.1  for stack of 52-141
		Stack = -1.5  for stack of 53-140
	Helix total = -11.2
	Internal/bulge = 4.1  for closure of 54-139	Size = 7
		Stack = -2.4  for stack of 59-135
		Stack = -3.3  for stack of 60-134
	Helix total = -5.7
	Hairpin = 6.5  for closure of 61-133
		Stack = -2.1  for stack of 1-33
		Stack = -2.4  for stack of 2-32
		Stack = -2.1  for stack of 3-31
		Stack = -3.4  for stack of 4-30
		Stack = -2.1  for stack of 5-29
		Stack = -1.4  for stack of 6-28
		Stack = -1.0  for stack of 7-27
	Helix total = -14.5
	Hairpin = 5.9  for closure of 8-26


	Total energy = -25.5



