Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:69 49:68 50:67 51:66 52:65 155:189 156:188 157:187
	    158:186 159:185 160:184 161:183 162:182 203:237 204:236 205:235
	    206:234 208:232 209:231 254:291 255:290 256:289 257:288 258:287
	    259:286 260:285 261:284
	Energy of Broken Structure: -72.9
	Energy of Pseudo-Helices:   -47.9
	Pseudoknot Energy Penalty:  46.4
	Total Free Energy:          -74.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-352
		Stack = -1.5  for stack of 2-351
		Stack = -2.1  for stack of 3-350
		Stack = -3.3  for stack of 4-349
		Stack = -3.4  for stack of 5-348
		Stack = -2.4  for stack of 6-347
	Helix total = -16.0
	Multiloop = 6.5  for closure of 7-346
		Stack = -2.1  for stack of 329-345
		Stack = -3.3  for stack of 330-344
		Stack = -3.3  for stack of 331-343
		Stack = -3.3  for stack of 332-342
	Helix total = -12.0
	Hairpin = 4.4  for closure of 333-341
		Stack = -2.4  for stack of 20-325
		Stack = -1.5  for stack of 21-324
		Stack = -1.3  for stack of 22-323
		Stack = -1.4  for stack of 23-322
		Stack = -0.5  for stack of 24-321
		Stack = 0.3  for stack of 25-320
		Stack = -2.5  for stack of 26-319
		Stack = -2.1  for stack of 27-318
	Helix total = -11.4
	Internal/bulge = 2.7  for closure of 28-317	Size = 8
		Stack = -1.4  for stack of 33-312
		Stack = -2.1  for stack of 34-311
	Helix total = -3.5
	Internal/bulge = 1.0  for closure of 35-310	Size = 1 BP stack across bulge = -2.4
		Stack = -0.6  for stack of 37-309
		Stack = -0.5  for stack of 38-308
	Helix total = -1.1
	Internal/bulge = 1.9  for closure of 39-307	Size = 2
		Stack = -1.4  for stack of 41-305
	Helix total = -1.4
	Internal/bulge = 3.6  for closure of 42-304	Size = 4
		Stack = -2.1  for stack of 43-299
		Stack = -1.1  for stack of 44-298
		Stack = -2.1  for stack of 45-297
		Stack = -3.4  for stack of 46-296
	Helix total = -8.7
	Multiloop = 2.4  for closure of 47-295
		Stack = -1.5  for stack of 239-274
		Stack = -1.4  for stack of 240-273
		Stack = -2.1  for stack of 241-272
	Helix total = -5.0
	Internal/bulge = -2.6  for closure of 242-271	Size = 4
		Stack = -1.4  for stack of 245-268
		Stack = -2.1  for stack of 246-267
		Stack = -2.2  for stack of 247-266
	Helix total = -5.7
	Internal/bulge = 1.9  for closure of 248-265	Size = 2
		Stack = -2.4  for stack of 250-263
	Helix total = -2.4
	Hairpin = 5.5  for closure of 251-262
		Stack = -3.4  for stack of 191-220
		Stack = -3.3  for stack of 192-219
	Helix total = -6.7
	Internal/bulge = 2.7  for closure of 193-218	Size = 7
		Stack = -2.4  for stack of 198-214
		Stack = -2.1  for stack of 199-213
		Stack = -3.4  for stack of 200-212
	Helix total = -7.9
	Hairpin = 4.0  for closure of 201-211
		Stack = -2.4  for stack of 141-175
		Stack = -2.5  for stack of 142-174
		Stack = -0.5  for stack of 143-173
		Stack = -1.5  for stack of 144-172
		Stack = -3.3  for stack of 145-171
		Stack = -2.1  for stack of 146-170
		Stack = -2.4  for stack of 147-169
		Stack = -3.3  for stack of 148-168
		Stack = -2.1  for stack of 149-167
		Stack = -0.6  for stack of 150-166
		Stack = -1.4  for stack of 151-165
	Helix total = -22.1
	Hairpin = 5.1  for closure of 152-164
		Stack = -1.3  for stack of 114-140
		Stack = 0.3  for stack of 115-139
		Stack = -2.5  for stack of 116-138
		Stack = -3.3  for stack of 117-137
	Helix total = -6.8
	Internal/bulge = 1.2  for closure of 118-136	Size = 2
		Stack = -2.4  for stack of 120-134
		Stack = -1.4  for stack of 121-133
	Helix total = -3.8
	Hairpin = 6.2  for closure of 122-132
		Stack = -2.4  for stack of 55-84
		Stack = -1.1  for stack of 56-83
		Stack = -1.3  for stack of 57-82
		Stack = -1.5  for stack of 58-81
		Stack = -2.4  for stack of 59-80
	Helix total = -8.7
	Hairpin = 5.5  for closure of 60-79


	Total energy = -72.9



