Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    53:68 54:67 55:66 56:65 100:128 102:126 103:125 104:124
	    150:166 152:164
	Energy of Broken Structure: -26.8
	Energy of Pseudo-Helices:   -9.6
	Pseudoknot Energy Penalty:  22.1
	Total Free Energy:          -14.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-260
		Stack = -1.5  for stack of 2-259
		Stack = -2.1  for stack of 3-258
		Stack = -2.4  for stack of 4-257
		Stack = -1.1  for stack of 5-256
		Stack = -2.1  for stack of 6-255
	Helix total = -12.5
	Multiloop = 5.1  for closure of 7-254
		Stack = -2.2  for stack of 237-253
		Stack = -2.1  for stack of 238-252
		Stack = -3.3  for stack of 239-251
		Stack = -3.3  for stack of 240-250
	Helix total = -10.9
	Hairpin = 4.4  for closure of 241-249
		Stack = -2.1  for stack of 20-233
	Helix total = -2.1
	Internal/bulge = 1.6  for closure of 21-232	Size = 1 BP stack across bulge = -2.2
		Stack = -1.4  for stack of 22-230
		Stack = -2.1  for stack of 23-229
		Stack = -3.3  for stack of 24-228
		Stack = -3.3  for stack of 25-227
	Helix total = -10.1
	Internal/bulge = 4.6  for closure of 26-226	Size = 12
		Stack = -2.1  for stack of 34-220
		Stack = -3.3  for stack of 35-219
		Stack = -3.3  for stack of 36-218
		Stack = -3.3  for stack of 37-217
		Stack = -2.2  for stack of 38-216
		Stack = -2.1  for stack of 39-215
		Stack = -3.4  for stack of 40-214
	Helix total = -19.7
	Internal/bulge = 3.6  for closure of 41-213	Size = 4
		Stack = -2.1  for stack of 42-208
		Stack = -1.1  for stack of 43-207
		Stack = -2.1  for stack of 44-206
		Stack = -3.4  for stack of 45-205
	Helix total = -8.7
	Multiloop = 3.2  for closure of 46-204
		Stack = -2.2  for stack of 187-200
	Helix total = -2.2
	Internal/bulge = 1.7  for closure of 188-199	Size = 4
	Helix total = 0.0
	Hairpin = 5.3  for closure of 191-196
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 154-185	Size = 2
		Stack = -1.5  for stack of 156-183
		Stack = 1.3  for stack of 157-182
	Helix total = -0.2
	Hairpin = 6.7  for closure of 158-181
		Stack = -1.4  for stack of 112-145
		Stack = -0.5  for stack of 113-144
		Stack = 0.3  for stack of 114-143
		Stack = -2.5  for stack of 115-142
	Helix total = -4.1
	Hairpin = 5.9  for closure of 116-141
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 47-64	Size = 2
		Stack = -0.9  for stack of 49-62
		Stack = -2.2  for stack of 50-61
	Helix total = -3.1
	Hairpin = 4.0  for closure of 51-60


	Total energy = -26.8



