Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:67 50:66 51:65 52:64 53:63 147:183 148:182 149:181
	    150:180 151:179 152:178 198:230 199:229 200:228 201:227 202:226
	    203:225 204:224 247:285 248:284 249:283 250:282 251:281 252:280
	    253:279
	Energy of Broken Structure: -126.7
	Energy of Pseudo-Helices:   -57.7
	Pseudoknot Energy Penalty:  32.3
	Total Free Energy:          -152.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-345
		Stack = -1.5  for stack of 2-344
		Stack = -2.1  for stack of 3-343
		Stack = -3.3  for stack of 4-342
		Stack = -2.2  for stack of 5-341
		Stack = -2.1  for stack of 6-340
	Helix total = -14.5
	Multiloop = 5.1  for closure of 7-339
		Stack = -3.3  for stack of 322-338
		Stack = -3.3  for stack of 323-337
		Stack = -3.3  for stack of 324-336
		Stack = -3.3  for stack of 325-335
	Helix total = -13.2
	Hairpin = 4.4  for closure of 326-334
		Stack = -2.4  for stack of 20-318
		Stack = -1.5  for stack of 21-317
		Stack = -0.5  for stack of 22-316
		Stack = -2.1  for stack of 23-315
		Stack = -3.3  for stack of 24-314
		Stack = -2.2  for stack of 25-313
		Stack = -2.4  for stack of 26-312
	Helix total = -14.4
	Internal/bulge = 1.1  for closure of 27-311	Size = 3
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 30-309	Size = 2
	Helix total = 0.0
	Internal/bulge = -1.4  for closure of 32-307	Size = 2
		Stack = -3.3  for stack of 34-305
		Stack = -3.4  for stack of 35-304
		Stack = -2.4  for stack of 36-303
	Helix total = -9.1
	Internal/bulge = 0.5  for closure of 37-302	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 39-301
		Stack = -3.4  for stack of 40-300
		Stack = -2.1  for stack of 41-299
	Helix total = -8.8
	Internal/bulge = 4.5  for closure of 42-298	Size = 5
		Stack = -2.4  for stack of 44-293
		Stack = -3.4  for stack of 45-292
		Stack = -2.4  for stack of 46-291
		Stack = -3.4  for stack of 47-290
	Helix total = -11.6
	Multiloop = 2.6  for closure of 48-289
		Stack = -2.1  for stack of 234-267
		Stack = -2.4  for stack of 235-266
		Stack = -3.3  for stack of 236-265
		Stack = -2.1  for stack of 237-264
		Stack = -2.1  for stack of 238-263
		Stack = -3.3  for stack of 239-262
		Stack = -3.4  for stack of 240-261
	Helix total = -18.7
	Internal/bulge = 2.3  for closure of 241-260	Size = 4
		Stack = -3.4  for stack of 243-256
		Stack = -3.3  for stack of 244-255
	Helix total = -6.7
	Hairpin = 4.5  for closure of 245-254
		Stack = -3.4  for stack of 186-214
		Stack = -3.3  for stack of 187-213
		Stack = -3.3  for stack of 188-212
		Stack = -2.4  for stack of 189-211
		Stack = -3.3  for stack of 190-210
		Stack = -3.3  for stack of 191-209
		Stack = -3.3  for stack of 192-208
	Helix total = -22.3
	Hairpin = 5.7  for closure of 193-207
		Stack = -3.3  for stack of 130-170
		Stack = -2.1  for stack of 131-169
		Stack = -1.5  for stack of 132-168
		Stack = -2.4  for stack of 133-167
	Helix total = -9.3
	Internal/bulge = 2.3  for closure of 134-166	Size = 4
		Stack = -3.3  for stack of 136-162
		Stack = -2.4  for stack of 137-161
		Stack = -3.3  for stack of 138-160
	Helix total = -9.0
	Internal/bulge = 3.0  for closure of 139-159	Size = 3
		Stack = -2.1  for stack of 141-156
		Stack = -3.4  for stack of 142-155
		Stack = -3.3  for stack of 143-154
	Helix total = -8.8
	Hairpin = 4.5  for closure of 144-153
		Stack = -2.4  for stack of 110-129
		Stack = -2.4  for stack of 111-128
		Stack = -3.4  for stack of 112-127
		Stack = -2.4  for stack of 113-126
		Stack = -3.3  for stack of 114-125
	Helix total = -13.9
	Hairpin = 4.4  for closure of 115-124
		Stack = -3.4  for stack of 55-78
		Stack = -2.4  for stack of 56-77
		Stack = -3.3  for stack of 57-76
		Stack = -3.3  for stack of 58-75
		Stack = -2.2  for stack of 59-74
	Helix total = -14.6
	Hairpin = 5.2  for closure of 60-73


	Total energy = -126.7



