Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    52:71 53:70 54:69 55:68 56:67 184:215 185:214 186:213
	    187:212 188:211 189:210 232:266 233:265 234:264 235:263 236:262
	    237:261 238:260 275:292 276:291 277:290 278:289 279:288 293:309
	    295:307 296:306
	Energy of Broken Structure: -67.3
	Energy of Pseudo-Helices:   -45.6
	Pseudoknot Energy Penalty:  53.6
	Total Free Energy:          -59.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-382
		Stack = -1.5  for stack of 2-381
		Stack = -2.1  for stack of 3-380
		Stack = -3.4  for stack of 4-379
		Stack = -2.1  for stack of 5-378
		Stack = -2.1  for stack of 6-377
	Helix total = -14.5
	Multiloop = 6.5  for closure of 7-376
		Stack = -2.2  for stack of 359-375
		Stack = -2.4  for stack of 360-374
		Stack = -3.3  for stack of 361-373
		Stack = -3.3  for stack of 362-372
	Helix total = -11.2
	Hairpin = 4.4  for closure of 363-371
		Stack = -2.4  for stack of 20-355
		Stack = -2.5  for stack of 21-354
		Stack = -1.5  for stack of 22-353
		Stack = -3.3  for stack of 23-352
		Stack = -2.1  for stack of 24-351
		Stack = -1.3  for stack of 25-350
		Stack = -2.1  for stack of 26-349
		Stack = -2.5  for stack of 27-348
	Helix total = -17.7
	Internal/bulge = 1.9  for closure of 28-347	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.9  for closure of 30-345	Size = 5
		Stack = -1.4  for stack of 33-341
		Stack = -1.3  for stack of 34-340
		Stack = -1.4  for stack of 35-339
		Stack = -1.5  for stack of 36-338
	Helix total = -5.6
	Internal/bulge = 1.7  for closure of 37-337	Size = 8
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 42-332	Size = 4
	Helix total = 0.0
	Internal/bulge = 3.0  for closure of 45-329	Size = 4
		Stack = -2.1  for stack of 47-325
		Stack = -2.1  for stack of 48-324
		Stack = -3.3  for stack of 49-323
		Stack = -2.5  for stack of 50-322
	Helix total = -10.0
	Multiloop = 5.3  for closure of 51-321
		Stack = -3.4  for stack of 299-317
		Stack = -3.3  for stack of 300-316
		Stack = -2.1  for stack of 301-315
	Helix total = -8.8
	Hairpin = 5.1  for closure of 302-314
		Stack = -1.1  for stack of 268-284
		Stack = -2.4  for stack of 269-283
		Stack = -3.3  for stack of 270-282
		Stack = -2.1  for stack of 271-281
	Helix total = -8.9
	Hairpin = 5.7  for closure of 272-280
		Stack = -3.4  for stack of 219-250
		Stack = -2.1  for stack of 220-249
		Stack = -1.3  for stack of 221-248
		Stack = -0.6  for stack of 222-247
		Stack = -1.3  for stack of 223-246
		Stack = -2.2  for stack of 224-245
		Stack = -2.1  for stack of 225-244
		Stack = -2.1  for stack of 226-243
		Stack = -2.5  for stack of 227-242
		Stack = -0.5  for stack of 228-241
		Stack = -1.5  for stack of 229-240
	Helix total = -19.6
	Hairpin = 3.4  for closure of 230-239
		Stack = -2.2  for stack of 170-202
		Stack = -2.1  for stack of 171-201
		Stack = -1.5  for stack of 172-200
		Stack = -2.4  for stack of 173-199
		Stack = -2.5  for stack of 174-198
	Helix total = -10.7
	Internal/bulge = 1.2  for closure of 175-197	Size = 2
		Stack = -2.5  for stack of 177-195
		Stack = -1.5  for stack of 178-194
		Stack = -3.3  for stack of 179-193
	Helix total = -7.3
	Hairpin = 4.3  for closure of 180-192
		Stack = -0.6  for stack of 114-161
	Helix total = -0.6
	Internal/bulge = 2.6  for closure of 115-160	Size = 4
		Stack = -0.9  for stack of 118-157
	Helix total = -0.9
	Internal/bulge = 1.9  for closure of 119-156	Size = 4
	Helix total = 0.0
	Internal/bulge = 2.7  for closure of 122-153	Size = 8
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 127-148	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 129-146	Size = 2
		Stack = -3.4  for stack of 131-144
		Stack = -2.1  for stack of 132-143
		Stack = -1.0  for stack of 133-142
	Helix total = -6.5
	Hairpin = 5.3  for closure of 134-141
		Stack = -2.1  for stack of 58-86
		Stack = -3.3  for stack of 59-85
		Stack = -2.4  for stack of 60-84
		Stack = -2.2  for stack of 61-83
		Stack = -2.1  for stack of 62-82
	Helix total = -12.1
	Hairpin = 6.6  for closure of 63-81


	Total energy = -67.3



