Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    54:80 55:79 57:77 58:76 59:75
	Energy of Broken Structure: -20.0
	Energy of Pseudo-Helices:   -4.4
	Pseudoknot Energy Penalty:  7.0
	Total Free Energy:          -17.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-344
		Stack = -1.5  for stack of 2-343
		Stack = -0.5  for stack of 3-342
		Stack = -2.5  for stack of 4-341
		Stack = -2.1  for stack of 5-340
		Stack = -2.1  for stack of 6-339
	Helix total = -12.0
	Multiloop = 6.5  for closure of 7-338
		Stack = -1.1  for stack of 321-337
		Stack = -2.1  for stack of 322-336
		Stack = -3.3  for stack of 323-335
		Stack = -3.3  for stack of 324-334
	Helix total = -9.8
	Hairpin = 4.4  for closure of 325-333
		Stack = -2.1  for stack of 20-317
		Stack = -1.1  for stack of 21-316
		Stack = -1.3  for stack of 22-315
		Stack = -0.6  for stack of 23-314
		Stack = -1.3  for stack of 24-313
		Stack = -0.9  for stack of 25-312
		Stack = -0.9  for stack of 26-311
		Stack = -0.9  for stack of 27-310
	Helix total = -9.1
	Internal/bulge = 5.5  for closure of 28-309	Size = 14
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 35-300	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 37-298	Size = 2
		Stack = -2.1  for stack of 39-296
		Stack = -2.5  for stack of 40-295
		Stack = -1.4  for stack of 41-294
		Stack = -2.2  for stack of 42-293
	Helix total = -8.2
	Internal/bulge = 3.7  for closure of 43-292	Size = 3
		Stack = -2.1  for stack of 44-288
		Stack = -2.1  for stack of 45-287
		Stack = -3.3  for stack of 46-286
		Stack = -2.2  for stack of 47-285
	Helix total = -9.7
	Internal/bulge = 8.7  for closure of 48-284	Size = 217
		Stack = -2.1  for stack of 49-66
		Stack = -0.9  for stack of 50-65
		Stack = -0.9  for stack of 51-64
		Stack = -2.1  for stack of 52-63
	Helix total = -6.0
	Hairpin = 3.9  for closure of 53-62


	Total energy = -20.0



