Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    12:304 13:303 14:302 15:301 16:300 17:299 18:298 63:239
	    64:238 65:237 66:236
	Energy of Broken Structure: -134.7
	Energy of Pseudo-Helices:   -24.9
	Pseudoknot Energy Penalty:  17.4
	Total Free Energy:          -142.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -0.8
		Stack = -3.3  for stack of 1-334
		Stack = -2.4  for stack of 2-333
		Stack = -2.1  for stack of 3-332
		Stack = -2.4  for stack of 4-331
		Stack = -2.1  for stack of 5-330
		Stack = -3.3  for stack of 6-329
		Stack = -2.4  for stack of 7-328
		Stack = -2.1  for stack of 8-327
		Stack = -3.4  for stack of 9-326
		Stack = -2.1  for stack of 10-325
	Helix total = -25.6
	Multiloop = 6.3  for closure of 11-324
		Stack = -0.9  for stack of 49-322
		Stack = -2.1  for stack of 50-321
	Helix total = -3.0
	Internal/bulge = 0.4  for closure of 51-320	Size = 1 BP stack across bulge = -3.4
		Stack = -3.3  for stack of 53-319
		Stack = -2.4  for stack of 54-318
		Stack = -3.3  for stack of 55-317
		Stack = -2.4  for stack of 56-316
	Helix total = -11.4
	Multiloop = 6.0  for closure of 57-315
		Stack = -3.3  for stack of 268-287
		Stack = -2.2  for stack of 269-286
		Stack = -2.1  for stack of 270-285
		Stack = -2.2  for stack of 271-284
		Stack = -2.1  for stack of 272-283
		Stack = -3.4  for stack of 273-282
		Stack = -2.4  for stack of 274-281
	Helix total = -17.7
	Hairpin = 3.1  for closure of 275-280
		Stack = -3.3  for stack of 215-261
		Stack = -3.4  for stack of 216-260
		Stack = -3.3  for stack of 217-259
	Helix total = -10.0
	Internal/bulge = 1.5  for closure of 218-258	Size = 10
		Stack = -3.3  for stack of 224-252
		Stack = -3.3  for stack of 225-251
		Stack = -3.3  for stack of 226-250
		Stack = -3.3  for stack of 227-249
	Helix total = -13.2
	Internal/bulge = 2.2  for closure of 228-248	Size = 3
		Stack = -1.0  for stack of 230-245
		Stack = -2.1  for stack of 231-244
		Stack = -3.3  for stack of 232-243
	Helix total = -6.4
	Hairpin = 4.5  for closure of 233-242
		Stack = -2.1  for stack of 58-211
		Stack = -2.4  for stack of 59-210
		Stack = -2.1  for stack of 60-209
	Helix total = -6.6
	Internal/bulge = 5.4  for closure of 61-208	Size = 6
		Stack = -2.1  for stack of 68-207
		Stack = -3.3  for stack of 69-206
		Stack = -2.2  for stack of 70-205
		Stack = -2.1  for stack of 71-204
	Helix total = -9.7
	Multiloop = 0.3  for closure of 72-203
		Stack = -3.3  for stack of 102-202
	Helix total = -3.3
	Internal/bulge = 3.2  for closure of 103-201	Size = 3
		Stack = -3.3  for stack of 107-200
	Helix total = -3.3
	Multiloop = 4.0  for closure of 108-199
		Stack = -2.4  for stack of 172-189
		Stack = -2.5  for stack of 173-188
		Stack = -1.5  for stack of 174-187
		Stack = -2.4  for stack of 175-186
		Stack = -3.3  for stack of 176-185
		Stack = -3.3  for stack of 177-184
	Helix total = -15.4
	Hairpin = 3.1  for closure of 178-183
		Stack = -3.3  for stack of 151-169
		Stack = -2.2  for stack of 152-168
		Stack = -2.1  for stack of 153-167
		Stack = -3.3  for stack of 154-166
		Stack = -3.3  for stack of 155-165
	Helix total = -14.2
	Hairpin = 3.8  for closure of 156-164
		Stack = -3.3  for stack of 125-143
	Helix total = -3.3
	Internal/bulge = 2.8  for closure of 126-142	Size = 2
		Stack = -3.4  for stack of 127-139
		Stack = -3.3  for stack of 128-138
		Stack = -3.3  for stack of 129-137
	Helix total = -10.0
	Hairpin = 3.4  for closure of 130-136
		Stack = -2.4  for stack of 88-101
		Stack = -2.1  for stack of 89-100
		Stack = -3.3  for stack of 90-99
		Stack = -3.3  for stack of 91-98
	Helix total = -11.1
	Hairpin = 3.1  for closure of 92-97
		Stack = -3.3  for stack of 73-87
		Stack = -2.4  for stack of 74-86
		Stack = -3.3  for stack of 75-85
		Stack = -3.3  for stack of 76-84
	Helix total = -12.3
	Hairpin = 4.6  for closure of 77-83
		Stack = -2.4  for stack of 20-44
		Stack = -3.3  for stack of 21-43
		Stack = -3.3  for stack of 22-42
		Stack = -1.5  for stack of 23-41
	Helix total = -10.5
	Internal/bulge = 1.3  for closure of 24-40	Size = 1 BP stack across bulge = -2.1
		Stack = -3.4  for stack of 25-38
		Stack = -2.4  for stack of 26-37
		Stack = -3.4  for stack of 27-36
		Stack = -2.1  for stack of 28-35
	Helix total = -11.3
	Hairpin = 5.4  for closure of 29-34


	Total energy = -134.7



