Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:68 50:67 51:66 52:65 53:64 142:168 143:167 144:166
	    201:236 204:233 205:232 254:291 255:290 256:289 257:288 258:287
	    259:286
	Energy of Broken Structure: -5.7
	Energy of Pseudo-Helices:   -25.2
	Pseudoknot Energy Penalty:  32.2
	Total Free Energy:          1.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-352
		Stack = -1.5  for stack of 2-351
		Stack = -2.1  for stack of 3-350
		Stack = -3.3  for stack of 4-349
		Stack = -3.4  for stack of 5-348
		Stack = -2.4  for stack of 6-347
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-346
		Stack = -3.4  for stack of 329-345
		Stack = -2.4  for stack of 330-344
		Stack = -3.3  for stack of 331-343
		Stack = -3.3  for stack of 332-342
	Helix total = -12.4
	Hairpin = 4.4  for closure of 333-341
		Stack = -2.4  for stack of 20-325
		Stack = -1.5  for stack of 21-324
		Stack = -0.5  for stack of 22-323
		Stack = -0.5  for stack of 23-322
		Stack = -1.3  for stack of 24-321
		Stack = -1.1  for stack of 25-320
		Stack = -1.3  for stack of 26-319
	Helix total = -8.6
	Internal/bulge = 1.9  for closure of 27-318	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.9  for closure of 29-316	Size = 5
	Helix total = 0.0
	Internal/bulge = 4.3  for closure of 33-313	Size = 22
		Stack = -2.4  for stack of 44-300
		Stack = -2.2  for stack of 45-299
		Stack = -1.3  for stack of 46-298
		Stack = -2.2  for stack of 47-297
	Helix total = -8.1
	Multiloop = 7.8  for closure of 48-296
		Stack = -1.4  for stack of 240-272
	Helix total = -1.4
	Internal/bulge = 3.9  for closure of 241-271	Size = 10
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 247-265	Size = 3
		Stack = -3.4  for stack of 249-262
		Stack = -3.3  for stack of 250-261
	Helix total = -6.7
	Hairpin = 4.5  for closure of 251-260
	Helix total = 0.0
	Internal/bulge = 1.8  for closure of 188-220	Size = 4
		Stack = -1.5  for stack of 191-217
	Helix total = -1.5
	Internal/bulge = 2.3  for closure of 192-216	Size = 8
		Stack = -3.3  for stack of 197-211
		Stack = -2.1  for stack of 198-210
	Helix total = -5.4
	Hairpin = 6.2  for closure of 199-209
		Stack = -0.5  for stack of 158-178
		Stack = -1.3  for stack of 159-177
		Stack = -1.1  for stack of 160-176
	Helix total = -2.9
	Internal/bulge = 1.9  for closure of 161-175	Size = 2
	Helix total = 0.0
	Hairpin = 5.3  for closure of 163-173
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 112-140	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 114-138	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.0  for closure of 116-136	Size = 8
	Helix total = 0.0
	Hairpin = 5.3  for closure of 121-131
		Stack = -0.9  for stack of 54-83
		Stack = -2.4  for stack of 55-82
		Stack = -3.3  for stack of 56-81
		Stack = -2.1  for stack of 57-80
		Stack = -1.3  for stack of 58-79
		Stack = -2.2  for stack of 59-78
	Helix total = -12.2
	Hairpin = 5.6  for closure of 60-77


	Total energy = -5.7



