Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    53:72 54:71 55:70 56:69 57:68 191:223 192:222 193:221
	    194:220 195:219 196:218 241:273 242:272 243:271 244:270 245:269
	    246:268 284:301 285:300 286:299 287:298 302:318 303:317 304:316
	    305:315
	Energy of Broken Structure: -22.2
	Energy of Pseudo-Helices:   -42.5
	Pseudoknot Energy Penalty:  39.8
	Total Free Energy:          -24.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-392
		Stack = -1.5  for stack of 2-391
		Stack = -2.1  for stack of 3-390
		Stack = -3.4  for stack of 4-389
		Stack = -3.3  for stack of 5-388
		Stack = -2.4  for stack of 6-387
	Helix total = -16.0
	Multiloop = 6.5  for closure of 7-386
		Stack = -2.1  for stack of 369-385
		Stack = -3.4  for stack of 370-384
		Stack = -2.1  for stack of 371-383
		Stack = -2.1  for stack of 372-382
	Helix total = -9.7
	Hairpin = 4.4  for closure of 373-381
		Stack = -2.1  for stack of 20-365
		Stack = -0.6  for stack of 21-364
		Stack = -0.5  for stack of 22-363
		Stack = 1.3  for stack of 23-362
		Stack = -0.6  for stack of 24-361
		Stack = -2.1  for stack of 25-360
		Stack = -3.3  for stack of 26-359
	Helix total = -7.9
	Internal/bulge = 1.5  for closure of 27-358	Size = 4
	Helix total = 0.0
	Internal/bulge = 3.7  for closure of 30-355	Size = 8
		Stack = -0.5  for stack of 35-350
		Stack = -1.5  for stack of 36-349
		Stack = -3.3  for stack of 37-348
	Helix total = -5.3
	Internal/bulge = 2.0  for closure of 38-347	Size = 8
	Helix total = 0.0
	Internal/bulge = -0.7  for closure of 43-342	Size = 2
		Stack = -1.1  for stack of 45-340
	Helix total = -1.1
	Internal/bulge = 3.0  for closure of 46-339	Size = 4
		Stack = -2.1  for stack of 48-335
		Stack = -2.1  for stack of 49-334
		Stack = -3.3  for stack of 50-333
		Stack = -2.2  for stack of 51-332
	Helix total = -9.7
	Multiloop = 6.7  for closure of 52-331
		Stack = -2.2  for stack of 308-327
		Stack = -0.9  for stack of 309-326
		Stack = -2.4  for stack of 310-325
		Stack = -2.1  for stack of 311-324
	Helix total = -7.6
	Hairpin = 5.0  for closure of 312-323
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 277-292	Size = 2
		Stack = -0.5  for stack of 279-290
		Stack = -1.4  for stack of 280-289
	Helix total = -1.9
	Hairpin = 3.9  for closure of 281-288
		Stack = -2.1  for stack of 228-257
		Stack = -2.4  for stack of 229-256
		Stack = -2.1  for stack of 230-255
		Stack = -1.3  for stack of 231-254
		Stack = -2.1  for stack of 232-253
	Helix total = -10.0
	Internal/bulge = 1.4  for closure of 233-252	Size = 8
	Helix total = 0.0
	Hairpin = 5.3  for closure of 238-247
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 177-209	Size = 2
		Stack = -2.4  for stack of 179-207
		Stack = -2.1  for stack of 180-206
		Stack = -1.1  for stack of 181-205
		Stack = -1.3  for stack of 182-204
		Stack = -0.9  for stack of 183-203
		Stack = -1.1  for stack of 184-202
		Stack = -1.3  for stack of 185-201
		Stack = -1.5  for stack of 186-200
	Helix total = -11.7
	Hairpin = 4.3  for closure of 187-199
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 119-157	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.4  for closure of 121-155	Size = 6
	Helix total = 0.0
	Internal/bulge = 3.4  for closure of 125-151	Size = 6
		Stack = -0.9  for stack of 129-147
	Helix total = -0.9
	Hairpin = 6.4  for closure of 130-146
		Stack = -2.1  for stack of 59-87
		Stack = -3.3  for stack of 60-86
		Stack = -1.5  for stack of 61-85
		Stack = -1.4  for stack of 62-84
		Stack = -2.4  for stack of 63-83
	Helix total = -10.7
	Hairpin = 6.1  for closure of 64-82


	Total energy = -22.2



