Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:59 49:58 50:57 148:184 149:183 150:182 151:181 152:180
	    153:179 199:228 200:227 201:226 202:225 203:224 248:284 249:283
	    250:282 251:281 252:280 253:279 254:278
	Energy of Broken Structure: -62.6
	Energy of Pseudo-Helices:   -33.3
	Pseudoknot Energy Penalty:  32.1
	Total Free Energy:          -63.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-346
		Stack = -1.5  for stack of 2-345
		Stack = -2.1  for stack of 3-344
		Stack = -2.5  for stack of 4-343
		Stack = -1.5  for stack of 5-342
		Stack = -2.4  for stack of 6-341
	Helix total = -13.3
	Multiloop = 5.1  for closure of 7-340
		Stack = -2.2  for stack of 323-339
		Stack = -2.1  for stack of 324-338
		Stack = -3.3  for stack of 325-337
		Stack = -3.3  for stack of 326-336
	Helix total = -10.9
	Hairpin = 4.4  for closure of 327-335
		Stack = -2.1  for stack of 20-319
		Stack = -0.6  for stack of 21-318
		Stack = -2.1  for stack of 22-317
		Stack = -3.4  for stack of 23-316
		Stack = -2.1  for stack of 24-315
		Stack = -1.1  for stack of 25-314
		Stack = -1.3  for stack of 26-313
	Helix total = -12.7
	Internal/bulge = 2.7  for closure of 27-312	Size = 8
		Stack = -0.5  for stack of 32-307
		Stack = -2.5  for stack of 33-306
		Stack = -2.1  for stack of 34-305
		Stack = -1.1  for stack of 35-304
		Stack = -1.3  for stack of 36-303
		Stack = -1.1  for stack of 37-302
		Stack = -0.9  for stack of 38-301
		Stack = -2.4  for stack of 39-300
	Helix total = -11.9
	Internal/bulge = 3.9  for closure of 40-299	Size = 7
		Stack = -2.4  for stack of 43-293
		Stack = -2.4  for stack of 44-292
		Stack = -2.2  for stack of 45-291
		Stack = -2.1  for stack of 46-290
	Helix total = -9.1
	Multiloop = 10.5  for closure of 47-289
		Stack = -2.5  for stack of 231-267
		Stack = -2.1  for stack of 232-266
	Helix total = -4.6
	Internal/bulge = 1.9  for closure of 233-265	Size = 2
		Stack = -1.1  for stack of 235-263
		Stack = -1.3  for stack of 236-262
		Stack = -2.1  for stack of 237-261
	Helix total = -4.5
	Internal/bulge = 0.7  for closure of 238-260	Size = 4
		Stack = -1.5  for stack of 241-257
		Stack = -2.5  for stack of 242-256
	Helix total = -4.0
	Hairpin = 4.5  for closure of 243-255
		Stack = -0.9  for stack of 189-213
		Stack = -2.4  for stack of 190-212
		Stack = -2.4  for stack of 191-211
		Stack = -2.4  for stack of 192-210
		Stack = -1.4  for stack of 193-209
		Stack = -1.5  for stack of 194-208
		Stack = -2.1  for stack of 195-207
	Helix total = -13.1
	Hairpin = 6.1  for closure of 196-206
		Stack = -1.3  for stack of 133-168
		Stack = -2.2  for stack of 134-167
		Stack = -2.1  for stack of 135-166
		Stack = -0.6  for stack of 136-165
		Stack = -2.4  for stack of 137-164
	Helix total = -8.6
	Internal/bulge = 2.2  for closure of 138-163	Size = 3
		Stack = -0.6  for stack of 140-160
		Stack = -2.5  for stack of 141-159
		Stack = -2.1  for stack of 142-158
		Stack = -0.6  for stack of 143-157
		Stack = -1.3  for stack of 144-156
		Stack = -1.4  for stack of 145-155
	Helix total = -8.5
	Hairpin = 5.1  for closure of 146-154
		Stack = -2.5  for stack of 104-132
	Helix total = -2.5
	Internal/bulge = 2.7  for closure of 105-131	Size = 6
		Stack = -2.1  for stack of 109-127
		Stack = -3.4  for stack of 110-126
		Stack = -2.1  for stack of 111-125
		Stack = -2.1  for stack of 112-124
	Helix total = -9.7
	Hairpin = 5.7  for closure of 113-123
		Stack = -2.1  for stack of 53-67
		Stack = -3.4  for stack of 54-66
		Stack = -2.4  for stack of 55-65
	Helix total = -7.9
	Hairpin = 4.9  for closure of 56-64


	Total energy = -62.6



