Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    55:84 56:83 57:82 58:81 59:80 185:219 186:218 187:217
	    188:216 189:215 190:214 234:270 235:269 236:268 237:267 238:266
	    239:265 240:264 287:325 288:324 289:323 290:322 291:321 292:320
	Energy of Broken Structure: -100.6
	Energy of Pseudo-Helices:   -45.1
	Pseudoknot Energy Penalty:  35.5
	Total Free Energy:          -110.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-385
		Stack = -1.5  for stack of 2-384
		Stack = -2.1  for stack of 3-383
		Stack = -2.4  for stack of 4-382
		Stack = -1.1  for stack of 5-381
		Stack = -2.1  for stack of 6-380
	Helix total = -12.5
	Multiloop = 5.0  for closure of 7-379
		Stack = -3.4  for stack of 362-378
		Stack = -2.4  for stack of 363-377
		Stack = -3.3  for stack of 364-376
		Stack = -3.3  for stack of 365-375
	Helix total = -12.4
	Hairpin = 4.4  for closure of 366-374
		Stack = -2.1  for stack of 19-358
	Helix total = -2.1
	Internal/bulge = -1.4  for closure of 20-357	Size = 2
		Stack = -2.4  for stack of 22-355
		Stack = -3.3  for stack of 23-354
	Helix total = -5.7
	Internal/bulge = 2.4  for closure of 24-353	Size = 9
		Stack = -2.4  for stack of 30-348
		Stack = -0.9  for stack of 31-347
	Helix total = -3.3
	Internal/bulge = 1.2  for closure of 32-346	Size = 2
		Stack = -2.1  for stack of 34-344
		Stack = -2.1  for stack of 35-343
		Stack = -3.3  for stack of 36-342
		Stack = -3.3  for stack of 37-341
	Helix total = -10.8
	Internal/bulge = 1.7  for closure of 38-340	Size = 10
		Stack = -2.4  for stack of 43-333
		Stack = -2.2  for stack of 44-332
		Stack = -2.1  for stack of 45-331
		Stack = -2.2  for stack of 46-330
	Helix total = -8.9
	Multiloop = 4.7  for closure of 47-329
		Stack = -3.3  for stack of 271-307
		Stack = -3.4  for stack of 272-306
		Stack = -3.3  for stack of 273-305
		Stack = -3.3  for stack of 274-304
	Helix total = -13.3
	Internal/bulge = 2.8  for closure of 275-303	Size = 2
		Stack = -2.4  for stack of 278-302
		Stack = -3.3  for stack of 279-301
		Stack = -3.4  for stack of 280-300
		Stack = -2.4  for stack of 281-299
		Stack = -2.4  for stack of 282-298
	Helix total = -13.9
	Hairpin = 6.7  for closure of 283-297
		Stack = -3.3  for stack of 224-252
		Stack = -2.1  for stack of 225-251
		Stack = -1.1  for stack of 226-250
		Stack = -2.4  for stack of 227-249
		Stack = -2.4  for stack of 228-248
		Stack = -2.4  for stack of 229-247
		Stack = -0.6  for stack of 230-246
		Stack = -2.5  for stack of 231-245
		Stack = -3.3  for stack of 232-244
	Helix total = -20.1
	Hairpin = 5.4  for closure of 233-243
		Stack = -2.1  for stack of 170-206
		Stack = -2.5  for stack of 171-205
		Stack = -1.5  for stack of 172-204
		Stack = -2.1  for stack of 173-203
		Stack = -2.1  for stack of 174-202
	Helix total = -10.3
	Internal/bulge = 2.3  for closure of 175-201	Size = 4
		Stack = -3.3  for stack of 177-197
		Stack = -2.4  for stack of 178-196
		Stack = -3.3  for stack of 179-195
		Stack = -3.3  for stack of 180-194
	Helix total = -12.3
	Hairpin = 5.5  for closure of 181-193
		Stack = -0.5  for stack of 123-157
		Stack = -1.5  for stack of 124-156
	Helix total = -2.0
	Internal/bulge = -0.1  for closure of 125-155	Size = 2
	Helix total = 0.0
	Internal/bulge = 0.6  for closure of 127-153	Size = 2
		Stack = -2.1  for stack of 129-151
		Stack = -2.4  for stack of 130-150
		Stack = -1.4  for stack of 131-149
		Stack = -2.5  for stack of 132-148
		Stack = -2.1  for stack of 133-147
		Stack = -2.1  for stack of 134-146
		Stack = -3.4  for stack of 135-145
	Helix total = -16.0
	Hairpin = 5.0  for closure of 136-144
		Stack = -2.4  for stack of 48-69
		Stack = -2.4  for stack of 49-68
		Stack = -2.1  for stack of 50-67
		Stack = -1.5  for stack of 51-66
	Helix total = -8.4
	Hairpin = 6.9  for closure of 52-65


	Total energy = -100.6



