Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    47:67 48:66 49:65 51:63 216:254 217:253 218:252 219:251
	    220:250 221:249 222:248 270:301 271:300 272:299 273:298 274:297
	    275:296 276:295 319:360 320:359 321:358 322:357 323:356 324:355
	    325:354 326:353
	Energy of Broken Structure: -39.6
	Energy of Pseudo-Helices:   -32.9
	Pseudoknot Energy Penalty:  44.3
	Total Free Energy:          -28.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-420
		Stack = -1.5  for stack of 2-419
		Stack = -2.1  for stack of 3-418
		Stack = -2.4  for stack of 4-417
		Stack = -1.1  for stack of 5-416
		Stack = -2.1  for stack of 6-415
	Helix total = -12.5
	Multiloop = 5.1  for closure of 7-414
		Stack = -3.4  for stack of 397-413
		Stack = -2.4  for stack of 398-412
		Stack = -3.3  for stack of 399-411
		Stack = -3.3  for stack of 400-410
	Helix total = -12.4
	Hairpin = 4.4  for closure of 401-409
		Stack = -2.1  for stack of 20-393
	Helix total = -2.1
	Internal/bulge = -0.7  for closure of 21-392	Size = 2
		Stack = -1.3  for stack of 23-390
		Stack = -0.9  for stack of 24-389
		Stack = -1.1  for stack of 25-388
		Stack = -1.0  for stack of 26-387
		Stack = -1.3  for stack of 27-386
	Helix total = -5.6
	Internal/bulge = 2.3  for closure of 28-385	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 31-382	Size = 2
		Stack = -2.1  for stack of 33-380
		Stack = -1.3  for stack of 34-379
		Stack = -0.9  for stack of 35-378
		Stack = -1.1  for stack of 36-377
		Stack = -1.3  for stack of 37-376
		Stack = -1.4  for stack of 38-375
		Stack = -0.5  for stack of 39-374
	Helix total = -8.6
	Internal/bulge = 5.2  for closure of 40-373	Size = 5
		Stack = -2.5  for stack of 42-368
		Stack = -2.1  for stack of 43-367
		Stack = -2.1  for stack of 44-366
		Stack = -2.2  for stack of 45-365
	Helix total = -8.9
	Multiloop = 4.3  for closure of 46-364
		Stack = -1.4  for stack of 304-341
		Stack = -0.9  for stack of 305-340
		Stack = -1.3  for stack of 306-339
		Stack = -1.1  for stack of 307-338
	Helix total = -4.7
	Internal/bulge = 2.3  for closure of 308-337	Size = 1 BP stack across bulge = -0.9
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 310-336	Size = 2
	Helix total = 0.0
	Internal/bulge = 5.2  for closure of 312-334	Size = 5
		Stack = -1.3  for stack of 314-329
		Stack = -2.1  for stack of 315-328
	Helix total = -3.4
	Hairpin = 5.5  for closure of 316-327
		Stack = -0.9  for stack of 258-286
		Stack = -0.9  for stack of 259-285
		Stack = -0.9  for stack of 260-284
		Stack = -1.1  for stack of 261-283
		Stack = -0.9  for stack of 262-282
		Stack = -2.4  for stack of 263-281
		Stack = -2.1  for stack of 264-280
		Stack = -1.3  for stack of 265-279
		Stack = -0.9  for stack of 266-278
	Helix total = -11.4
	Hairpin = 6.3  for closure of 267-277
		Stack = -1.1  for stack of 202-233
		Stack = -1.3  for stack of 203-232
		Stack = -0.9  for stack of 204-231
		Stack = -1.1  for stack of 205-230
		Stack = -1.3  for stack of 206-229
		Stack = -2.1  for stack of 207-228
		Stack = -2.2  for stack of 208-227
		Stack = -0.9  for stack of 209-226
		Stack = -1.3  for stack of 210-225
		Stack = -0.9  for stack of 211-224
	Helix total = -13.1
	Hairpin = 6.4  for closure of 212-223
		Stack = -3.3  for stack of 187-198
	Helix total = -3.3
	Internal/bulge = 1.2  for closure of 188-197	Size = 2
	Helix total = 0.0
	Hairpin = 4.7  for closure of 190-195
		Stack = -0.6  for stack of 160-185
		Stack = -1.3  for stack of 161-184
		Stack = -0.6  for stack of 162-183
		Stack = -2.5  for stack of 163-182
		Stack = -2.1  for stack of 164-181
		Stack = -0.6  for stack of 165-180
		Stack = -2.5  for stack of 166-179
	Helix total = -10.2
	Hairpin = 5.1  for closure of 167-178
		Stack = -2.1  for stack of 54-77
		Stack = -0.6  for stack of 55-76
		Stack = -1.3  for stack of 56-75
		Stack = -2.2  for stack of 57-74
		Stack = -2.1  for stack of 58-73
	Helix total = -8.3
	Hairpin = 6.2  for closure of 59-72


	Total energy = -39.6



